Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC13.51□□□□□ -0.25
COL6A5A8TX70 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
COL6A5A8TX70 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC13.51□□□□□ -0.25
COL6A5A8TX70 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC13.51□□□□□ -0.25
COL6A5A8TX70 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC13.51□□□□□ -0.25
COL6A5A8TX70 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC13.51□□□□□ -0.25
COL6A5A8TX70 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
COL6A5A8TX70 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
COL6A5A8TX70 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL6A5A8TX70 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC13.5□□□□□ -0.25
COL6A5A8TX70 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC13.5□□□□□ -0.25
COL6A5A8TX70 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC13.5□□□□□ -0.25
COL6A5A8TX70 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC13.5□□□□□ -0.25
COL6A5A8TX70 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL6A5A8TX70 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC13.5□□□□□ -0.25
COL6A5A8TX70 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC13.5□□□□□ -0.25
COL6A5A8TX70 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL6A5A8TX70 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL6A5A8TX70 AC093677.2-201ENST00000600169 1863 ntBASIC13.5□□□□□ -0.25
COL6A5A8TX70 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC13.5□□□□□ -0.25
COL6A5A8TX70 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
COL6A5A8TX70 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC13.5□□□□□ -0.25
COL6A5A8TX70 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL6A5A8TX70 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
COL6A5A8TX70 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC13.5□□□□□ -0.25
COL6A5A8TX70 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL6A5A8TX70 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
COL6A5A8TX70 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL6A5A8TX70 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC13.5□□□□□ -0.25
COL6A5A8TX70 AC007389.4-201ENST00000454674 793 ntBASIC13.5□□□□□ -0.25
COL6A5A8TX70 RN7SL837P-201ENST00000463010 287 ntBASIC13.5□□□□□ -0.25
COL6A5A8TX70 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL6A5A8TX70 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL6A5A8TX70 ERH-203ENST00000557016 1124 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL6A5A8TX70 MPI-209ENST00000564003 1195 ntTSL 2 BASIC13.5□□□□□ -0.25
COL6A5A8TX70 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC13.5□□□□□ -0.25
COL6A5A8TX70 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL6A5A8TX70 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL6A5A8TX70 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL6A5A8TX70 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC13.5□□□□□ -0.25
COL6A5A8TX70 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC13.5□□□□□ -0.25
COL6A5A8TX70 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL6A5A8TX70 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC13.49□□□□□ -0.25
COL6A5A8TX70 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
COL6A5A8TX70 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
COL6A5A8TX70 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
COL6A5A8TX70 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
COL6A5A8TX70 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC13.49□□□□□ -0.25
COL6A5A8TX70 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC13.49□□□□□ -0.25
COL6A5A8TX70 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
COL6A5A8TX70 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
COL6A5A8TX70 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC13.49□□□□□ -0.25
COL6A5A8TX70 AC008736.2-201ENST00000587554 516 ntTSL 2 BASIC13.49□□□□□ -0.25
COL6A5A8TX70 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC13.49□□□□□ -0.25
COL6A5A8TX70 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC13.49□□□□□ -0.25
COL6A5A8TX70 SNAI3-AS1-205ENST00000568633 2096 ntBASIC13.49□□□□□ -0.25
COL6A5A8TX70 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
COL6A5A8TX70 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC13.49□□□□□ -0.25
COL6A5A8TX70 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
COL6A5A8TX70 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
COL6A5A8TX70 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
COL6A5A8TX70 AC141586.3-201ENST00000562166 1838 ntBASIC13.49□□□□□ -0.25
COL6A5A8TX70 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
COL6A5A8TX70 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC13.49□□□□□ -0.25
COL6A5A8TX70 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
COL6A5A8TX70 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC13.49□□□□□ -0.25
COL6A5A8TX70 NKX3-1-202ENST00000523261 713 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
COL6A5A8TX70 AC008735.3-201ENST00000596646 500 ntBASIC13.49□□□□□ -0.25
COL6A5A8TX70 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC13.49□□□□□ -0.25
COL6A5A8TX70 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC13.49□□□□□ -0.25
COL6A5A8TX70 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
COL6A5A8TX70 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC13.49□□□□□ -0.25
COL6A5A8TX70 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC13.49□□□□□ -0.25
COL6A5A8TX70 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC13.49□□□□□ -0.25
COL6A5A8TX70 MYLKP1-201ENST00000509077 1580 ntBASIC13.49□□□□□ -0.25
COL6A5A8TX70 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC13.48□□□□□ -0.25
COL6A5A8TX70 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC13.48□□□□□ -0.25
COL6A5A8TX70 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC13.48□□□□□ -0.25
COL6A5A8TX70 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC13.48□□□□□ -0.25
COL6A5A8TX70 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC13.48□□□□□ -0.25
COL6A5A8TX70 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC13.48□□□□□ -0.25
COL6A5A8TX70 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL6A5A8TX70 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL6A5A8TX70 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL6A5A8TX70 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC13.48□□□□□ -0.25
COL6A5A8TX70 TMEM14DP-201ENST00000422205 345 ntBASIC13.48□□□□□ -0.25
COL6A5A8TX70 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC13.48□□□□□ -0.25
COL6A5A8TX70 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC13.48□□□□□ -0.25
COL6A5A8TX70 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL6A5A8TX70 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC13.48□□□□□ -0.25
COL6A5A8TX70 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC13.48□□□□□ -0.25
COL6A5A8TX70 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL6A5A8TX70 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC13.48□□□□□ -0.25
COL6A5A8TX70 AL157384.1-201ENST00000445995 2473 ntBASIC13.48□□□□□ -0.25
COL6A5A8TX70 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC13.48□□□□□ -0.25
COL6A5A8TX70 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC13.48□□□□□ -0.25
COL6A5A8TX70 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC13.48□□□□□ -0.25
COL6A5A8TX70 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL6A5A8TX70 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC13.48□□□□□ -0.25
COL6A5A8TX70 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC13.48□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms