Protein–RNA interactions for Protein: Q9Y6R9

CCDC61, Coiled-coil domain-containing protein 61, humanhuman

Predictions only

Length 512 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC61Q9Y6R9 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC23.92■■□□□ 1.42
CCDC61Q9Y6R9 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC23.92■■□□□ 1.42
CCDC61Q9Y6R9 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
CCDC61Q9Y6R9 CITED2-204ENST00000618718 901 ntTSL 2 BASIC23.92■■□□□ 1.42
CCDC61Q9Y6R9 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC23.92■■□□□ 1.42
CCDC61Q9Y6R9 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
CCDC61Q9Y6R9 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
CCDC61Q9Y6R9 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC23.91■■□□□ 1.42
CCDC61Q9Y6R9 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC23.91■■□□□ 1.42
CCDC61Q9Y6R9 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
CCDC61Q9Y6R9 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC23.91■■□□□ 1.42
CCDC61Q9Y6R9 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC23.91■■□□□ 1.42
CCDC61Q9Y6R9 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC23.91■■□□□ 1.42
CCDC61Q9Y6R9 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
CCDC61Q9Y6R9 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
CCDC61Q9Y6R9 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC23.91■■□□□ 1.42
CCDC61Q9Y6R9 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC23.91■■□□□ 1.42
CCDC61Q9Y6R9 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC23.91■■□□□ 1.42
CCDC61Q9Y6R9 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
CCDC61Q9Y6R9 AL645939.2-201ENST00000427340 991 ntBASIC23.91■■□□□ 1.42
CCDC61Q9Y6R9 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC23.91■■□□□ 1.42
CCDC61Q9Y6R9 CCND1-203ENST00000536559 553 ntTSL 3 BASIC23.91■■□□□ 1.42
CCDC61Q9Y6R9 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC23.91■■□□□ 1.42
CCDC61Q9Y6R9 AC091812.2-201ENST00000619081 385 ntBASIC23.91■■□□□ 1.42
CCDC61Q9Y6R9 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC23.91■■□□□ 1.42
CCDC61Q9Y6R9 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC23.91■■□□□ 1.42
CCDC61Q9Y6R9 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
CCDC61Q9Y6R9 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
CCDC61Q9Y6R9 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC23.91■■□□□ 1.42
CCDC61Q9Y6R9 TNXA-203ENST00000507684 2038 ntBASIC23.91■■□□□ 1.42
CCDC61Q9Y6R9 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC23.91■■□□□ 1.42
CCDC61Q9Y6R9 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
CCDC61Q9Y6R9 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
CCDC61Q9Y6R9 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC23.91■■□□□ 1.42
CCDC61Q9Y6R9 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC23.9■■□□□ 1.42
CCDC61Q9Y6R9 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
CCDC61Q9Y6R9 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC23.9■■□□□ 1.42
CCDC61Q9Y6R9 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC23.9■■□□□ 1.42
CCDC61Q9Y6R9 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC23.9■■□□□ 1.42
CCDC61Q9Y6R9 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC23.9■■□□□ 1.42
CCDC61Q9Y6R9 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC23.9■■□□□ 1.42
CCDC61Q9Y6R9 AL135999.2-201ENST00000622438 1686 ntBASIC23.9■■□□□ 1.42
CCDC61Q9Y6R9 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
CCDC61Q9Y6R9 MADD-208ENST00000405573 1823 ntTSL 5 BASIC23.9■■□□□ 1.42
CCDC61Q9Y6R9 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC23.9■■□□□ 1.42
CCDC61Q9Y6R9 STOM-202ENST00000347359 870 ntTSL 2 BASIC23.9■■□□□ 1.42
CCDC61Q9Y6R9 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
CCDC61Q9Y6R9 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC23.9■■□□□ 1.42
CCDC61Q9Y6R9 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC23.9■■□□□ 1.42
CCDC61Q9Y6R9 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC23.9■■□□□ 1.42
CCDC61Q9Y6R9 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC23.9■■□□□ 1.42
CCDC61Q9Y6R9 AP000344.2-201ENST00000512987 629 ntBASIC23.9■■□□□ 1.42
CCDC61Q9Y6R9 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC23.9■■□□□ 1.42
CCDC61Q9Y6R9 CYB561-216ENST00000582297 897 ntTSL 3 BASIC23.9■■□□□ 1.42
CCDC61Q9Y6R9 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC23.9■■□□□ 1.42
CCDC61Q9Y6R9 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
CCDC61Q9Y6R9 AC092902.6-201ENST00000641783 218 ntBASIC23.9■■□□□ 1.42
CCDC61Q9Y6R9 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
CCDC61Q9Y6R9 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
CCDC61Q9Y6R9 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
CCDC61Q9Y6R9 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
CCDC61Q9Y6R9 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
CCDC61Q9Y6R9 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC23.9■■□□□ 1.42
CCDC61Q9Y6R9 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC23.9■■□□□ 1.42
CCDC61Q9Y6R9 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC23.9■■□□□ 1.42
CCDC61Q9Y6R9 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
CCDC61Q9Y6R9 REXO1L11P-201ENST00000620964 1927 ntBASIC23.9■■□□□ 1.42
CCDC61Q9Y6R9 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC23.9■■□□□ 1.42
CCDC61Q9Y6R9 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC23.9■■□□□ 1.42
CCDC61Q9Y6R9 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC23.9■■□□□ 1.42
CCDC61Q9Y6R9 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC23.9■■□□□ 1.42
CCDC61Q9Y6R9 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC23.9■■□□□ 1.42
CCDC61Q9Y6R9 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC23.89■■□□□ 1.42
CCDC61Q9Y6R9 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC23.89■■□□□ 1.42
CCDC61Q9Y6R9 REM2-202ENST00000536884 1331 ntTSL 2 BASIC23.89■■□□□ 1.42
CCDC61Q9Y6R9 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC23.89■■□□□ 1.42
CCDC61Q9Y6R9 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
CCDC61Q9Y6R9 PAWRP1-201ENST00000451083 565 ntBASIC23.89■■□□□ 1.41
CCDC61Q9Y6R9 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC23.89■■□□□ 1.41
CCDC61Q9Y6R9 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC23.89■■□□□ 1.41
CCDC61Q9Y6R9 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC23.89■■□□□ 1.41
CCDC61Q9Y6R9 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC23.89■■□□□ 1.41
CCDC61Q9Y6R9 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC23.89■■□□□ 1.41
CCDC61Q9Y6R9 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC23.89■■□□□ 1.41
CCDC61Q9Y6R9 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC23.89■■□□□ 1.41
CCDC61Q9Y6R9 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
CCDC61Q9Y6R9 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
CCDC61Q9Y6R9 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC23.89■■□□□ 1.41
CCDC61Q9Y6R9 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC23.89■■□□□ 1.41
CCDC61Q9Y6R9 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC23.89■■□□□ 1.41
CCDC61Q9Y6R9 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
CCDC61Q9Y6R9 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC23.88■■□□□ 1.41
CCDC61Q9Y6R9 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC23.88■■□□□ 1.41
CCDC61Q9Y6R9 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
CCDC61Q9Y6R9 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
CCDC61Q9Y6R9 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
CCDC61Q9Y6R9 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC23.88■■□□□ 1.41
CCDC61Q9Y6R9 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC23.88■■□□□ 1.41
CCDC61Q9Y6R9 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC23.88■■□□□ 1.41
CCDC61Q9Y6R9 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC23.88■■□□□ 1.41
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms