Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SIX4Q9UIU6 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SIX4Q9UIU6 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC18.82■□□□□ 0.6
SIX4Q9UIU6 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SIX4Q9UIU6 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
SIX4Q9UIU6 HIST2H3DP1-201ENST00000401004 416 ntBASIC18.82■□□□□ 0.6
SIX4Q9UIU6 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
SIX4Q9UIU6 AL020989.1-201ENST00000422979 469 ntBASIC18.82■□□□□ 0.6
SIX4Q9UIU6 HNRNPDP1-201ENST00000439535 754 ntBASIC18.82■□□□□ 0.6
SIX4Q9UIU6 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC18.82■□□□□ 0.6
SIX4Q9UIU6 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
SIX4Q9UIU6 STK19B-204ENST00000512515 211 ntBASIC18.82■□□□□ 0.6
SIX4Q9UIU6 RNA5SP419-201ENST00000515908 135 ntBASIC18.82■□□□□ 0.6
SIX4Q9UIU6 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SIX4Q9UIU6 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SIX4Q9UIU6 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
SIX4Q9UIU6 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SIX4Q9UIU6 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SIX4Q9UIU6 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC18.82■□□□□ 0.6
SIX4Q9UIU6 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SIX4Q9UIU6 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SIX4Q9UIU6 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
SIX4Q9UIU6 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
SIX4Q9UIU6 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SIX4Q9UIU6 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC18.81■□□□□ 0.6
SIX4Q9UIU6 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SIX4Q9UIU6 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC18.81■□□□□ 0.6
SIX4Q9UIU6 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SIX4Q9UIU6 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SIX4Q9UIU6 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC18.81■□□□□ 0.6
SIX4Q9UIU6 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC18.81■□□□□ 0.6
SIX4Q9UIU6 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC18.81■□□□□ 0.6
SIX4Q9UIU6 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
SIX4Q9UIU6 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
SIX4Q9UIU6 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SIX4Q9UIU6 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
SIX4Q9UIU6 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
SIX4Q9UIU6 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
SIX4Q9UIU6 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC18.81■□□□□ 0.6
SIX4Q9UIU6 KRT18P67-201ENST00000432816 1264 ntBASIC18.81■□□□□ 0.6
SIX4Q9UIU6 SCARNA2-201ENST00000458748 420 ntBASIC18.81■□□□□ 0.6
SIX4Q9UIU6 PPIE-208ENST00000470213 927 ntTSL 3 BASIC18.81■□□□□ 0.6
SIX4Q9UIU6 RNPS1P1-201ENST00000507437 918 ntBASIC18.81■□□□□ 0.6
SIX4Q9UIU6 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SIX4Q9UIU6 MOK-208ENST00000519058 917 ntTSL 2 BASIC18.81■□□□□ 0.6
SIX4Q9UIU6 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC18.81■□□□□ 0.6
SIX4Q9UIU6 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC18.81■□□□□ 0.6
SIX4Q9UIU6 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC18.81■□□□□ 0.6
SIX4Q9UIU6 CYB561-217ENST00000582997 877 ntTSL 5 BASIC18.81■□□□□ 0.6
SIX4Q9UIU6 TK1-204ENST00000590430 683 ntTSL 3 BASIC18.81■□□□□ 0.6
SIX4Q9UIU6 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC18.81■□□□□ 0.6
SIX4Q9UIU6 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC18.81■□□□□ 0.6
SIX4Q9UIU6 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
SIX4Q9UIU6 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
SIX4Q9UIU6 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC18.81■□□□□ 0.6
SIX4Q9UIU6 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SIX4Q9UIU6 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SIX4Q9UIU6 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC18.81■□□□□ 0.6
SIX4Q9UIU6 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC18.81■□□□□ 0.6
SIX4Q9UIU6 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SIX4Q9UIU6 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC18.81■□□□□ 0.6
SIX4Q9UIU6 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SIX4Q9UIU6 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SIX4Q9UIU6 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
SIX4Q9UIU6 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
SIX4Q9UIU6 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
SIX4Q9UIU6 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
SIX4Q9UIU6 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SIX4Q9UIU6 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SIX4Q9UIU6 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SIX4Q9UIU6 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SIX4Q9UIU6 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SIX4Q9UIU6 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SIX4Q9UIU6 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SIX4Q9UIU6 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC18.8■□□□□ 0.6
SIX4Q9UIU6 PRYP5-201ENST00000451909 266 ntBASIC18.8■□□□□ 0.6
SIX4Q9UIU6 MTDHP4-201ENST00000600287 670 ntBASIC18.8■□□□□ 0.6
SIX4Q9UIU6 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
SIX4Q9UIU6 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SIX4Q9UIU6 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SIX4Q9UIU6 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
SIX4Q9UIU6 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC18.8■□□□□ 0.6
SIX4Q9UIU6 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC18.8■□□□□ 0.6
SIX4Q9UIU6 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC18.8■□□□□ 0.6
SIX4Q9UIU6 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
SIX4Q9UIU6 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC18.8■□□□□ 0.6
SIX4Q9UIU6 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
SIX4Q9UIU6 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC18.8■□□□□ 0.6
SIX4Q9UIU6 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SIX4Q9UIU6 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC18.79■□□□□ 0.6
SIX4Q9UIU6 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC18.79■□□□□ 0.6
SIX4Q9UIU6 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC18.79■□□□□ 0.6
SIX4Q9UIU6 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
SIX4Q9UIU6 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
SIX4Q9UIU6 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
SIX4Q9UIU6 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SIX4Q9UIU6 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
SIX4Q9UIU6 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
SIX4Q9UIU6 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
SIX4Q9UIU6 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms