Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
NUP88Q99567 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
NUP88Q99567 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
NUP88Q99567 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC20.63■□□□□ 0.89
NUP88Q99567 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC20.63■□□□□ 0.89
NUP88Q99567 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
NUP88Q99567 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
NUP88Q99567 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
NUP88Q99567 AC022898.2-201ENST00000616822 1312 ntBASIC20.63■□□□□ 0.89
NUP88Q99567 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC20.63■□□□□ 0.89
NUP88Q99567 MADD-208ENST00000405573 1823 ntTSL 5 BASIC20.63■□□□□ 0.89
NUP88Q99567 CD9-202ENST00000382515 1229 ntTSL 5 BASIC20.63■□□□□ 0.89
NUP88Q99567 MIR574-201ENST00000385209 96 ntBASIC20.63■□□□□ 0.89
NUP88Q99567 CSF3-203ENST00000394148 622 ntTSL 3 BASIC20.63■□□□□ 0.89
NUP88Q99567 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC20.63■□□□□ 0.89
NUP88Q99567 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
NUP88Q99567 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC20.63■□□□□ 0.89
NUP88Q99567 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC20.63■□□□□ 0.89
NUP88Q99567 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC20.63■□□□□ 0.89
NUP88Q99567 AC093909.1-201ENST00000504731 1122 ntBASIC20.63■□□□□ 0.89
NUP88Q99567 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC20.63■□□□□ 0.89
NUP88Q99567 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC20.63■□□□□ 0.89
NUP88Q99567 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
NUP88Q99567 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC20.63■□□□□ 0.89
NUP88Q99567 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC20.63■□□□□ 0.89
NUP88Q99567 AP000997.3-201ENST00000623333 2250 ntBASIC20.63■□□□□ 0.89
NUP88Q99567 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC20.63■□□□□ 0.89
NUP88Q99567 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
NUP88Q99567 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
NUP88Q99567 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
NUP88Q99567 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
NUP88Q99567 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
NUP88Q99567 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC20.63■□□□□ 0.89
NUP88Q99567 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
NUP88Q99567 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
NUP88Q99567 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC20.62■□□□□ 0.89
NUP88Q99567 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
NUP88Q99567 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
NUP88Q99567 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
NUP88Q99567 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
NUP88Q99567 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
NUP88Q99567 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC20.62■□□□□ 0.89
NUP88Q99567 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC20.62■□□□□ 0.89
NUP88Q99567 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
NUP88Q99567 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
NUP88Q99567 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
NUP88Q99567 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
NUP88Q99567 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
NUP88Q99567 RPL18-209ENST00000550645 463 ntTSL 5 BASIC20.62■□□□□ 0.89
NUP88Q99567 RPL18-214ENST00000552588 559 ntTSL 3 BASIC20.62■□□□□ 0.89
NUP88Q99567 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC20.62■□□□□ 0.89
NUP88Q99567 MTDHP4-201ENST00000600287 670 ntBASIC20.62■□□□□ 0.89
NUP88Q99567 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
NUP88Q99567 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
NUP88Q99567 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC20.62■□□□□ 0.89
NUP88Q99567 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC20.62■□□□□ 0.89
NUP88Q99567 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
NUP88Q99567 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC20.62■□□□□ 0.89
NUP88Q99567 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
NUP88Q99567 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC20.62■□□□□ 0.89
NUP88Q99567 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
NUP88Q99567 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC20.62■□□□□ 0.89
NUP88Q99567 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
NUP88Q99567 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC20.62■□□□□ 0.89
NUP88Q99567 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
NUP88Q99567 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
NUP88Q99567 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
NUP88Q99567 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC20.61■□□□□ 0.89
NUP88Q99567 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
NUP88Q99567 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC20.61■□□□□ 0.89
NUP88Q99567 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
NUP88Q99567 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
NUP88Q99567 PMPCAP1-201ENST00000508114 1576 ntBASIC20.61■□□□□ 0.89
NUP88Q99567 RAB17-203ENST00000409576 466 ntTSL 3 BASIC20.61■□□□□ 0.89
NUP88Q99567 PON3-205ENST00000451904 1053 ntTSL 3 BASIC20.61■□□□□ 0.89
NUP88Q99567 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC20.61■□□□□ 0.89
NUP88Q99567 CALM1-205ENST00000553542 877 ntTSL 5 BASIC20.61■□□□□ 0.89
NUP88Q99567 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
NUP88Q99567 AL139288.1-201ENST00000623748 933 ntBASIC20.61■□□□□ 0.89
NUP88Q99567 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
NUP88Q99567 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC20.61■□□□□ 0.89
NUP88Q99567 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC20.61■□□□□ 0.89
NUP88Q99567 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC20.61■□□□□ 0.89
NUP88Q99567 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC20.61■□□□□ 0.89
NUP88Q99567 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
NUP88Q99567 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC20.61■□□□□ 0.89
NUP88Q99567 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
NUP88Q99567 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
NUP88Q99567 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
NUP88Q99567 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
NUP88Q99567 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
NUP88Q99567 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC20.6■□□□□ 0.89
NUP88Q99567 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
NUP88Q99567 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
NUP88Q99567 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
NUP88Q99567 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC20.6■□□□□ 0.89
NUP88Q99567 SRP19-202ENST00000445150 833 ntTSL 2 BASIC20.6■□□□□ 0.89
NUP88Q99567 RPL13AP23-201ENST00000480739 586 ntBASIC20.6■□□□□ 0.89
NUP88Q99567 AC122714.2-201ENST00000502787 707 ntBASIC20.6■□□□□ 0.89
NUP88Q99567 OR7E14P-202ENST00000530490 1290 ntBASIC20.6■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms