Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
VPS13AQ96RL7 PGF-202ENST00000405431 666 ntTSL 5 BASIC17.28■□□□□ 0.36
VPS13AQ96RL7 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC17.28■□□□□ 0.36
VPS13AQ96RL7 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC17.28■□□□□ 0.36
VPS13AQ96RL7 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
VPS13AQ96RL7 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC17.28■□□□□ 0.36
VPS13AQ96RL7 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC17.28■□□□□ 0.36
VPS13AQ96RL7 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC17.28■□□□□ 0.36
VPS13AQ96RL7 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
VPS13AQ96RL7 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC17.28■□□□□ 0.36
VPS13AQ96RL7 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
VPS13AQ96RL7 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VPS13AQ96RL7 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC17.28■□□□□ 0.36
VPS13AQ96RL7 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC17.28■□□□□ 0.36
VPS13AQ96RL7 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VPS13AQ96RL7 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VPS13AQ96RL7 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VPS13AQ96RL7 FAM185BP-201ENST00000443595 716 ntBASIC17.28■□□□□ 0.36
VPS13AQ96RL7 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
VPS13AQ96RL7 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
VPS13AQ96RL7 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC17.28■□□□□ 0.36
VPS13AQ96RL7 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC17.28■□□□□ 0.36
VPS13AQ96RL7 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VPS13AQ96RL7 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VPS13AQ96RL7 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC17.28■□□□□ 0.36
VPS13AQ96RL7 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
VPS13AQ96RL7 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
VPS13AQ96RL7 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
VPS13AQ96RL7 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
VPS13AQ96RL7 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
VPS13AQ96RL7 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC17.27■□□□□ 0.36
VPS13AQ96RL7 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC17.27■□□□□ 0.36
VPS13AQ96RL7 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
VPS13AQ96RL7 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC17.27■□□□□ 0.36
VPS13AQ96RL7 AC126763.1-201ENST00000552015 2118 ntBASIC17.27■□□□□ 0.36
VPS13AQ96RL7 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
VPS13AQ96RL7 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
VPS13AQ96RL7 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
VPS13AQ96RL7 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
VPS13AQ96RL7 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
VPS13AQ96RL7 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC17.27■□□□□ 0.36
VPS13AQ96RL7 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
VPS13AQ96RL7 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC17.27■□□□□ 0.35
VPS13AQ96RL7 ADM-207ENST00000530439 1839 ntTSL 2 BASIC17.27■□□□□ 0.35
VPS13AQ96RL7 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
VPS13AQ96RL7 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
VPS13AQ96RL7 AC019129.2-201ENST00000609837 1235 ntBASIC17.27■□□□□ 0.35
VPS13AQ96RL7 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC17.27■□□□□ 0.35
VPS13AQ96RL7 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC17.27■□□□□ 0.35
VPS13AQ96RL7 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.35
VPS13AQ96RL7 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
VPS13AQ96RL7 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
VPS13AQ96RL7 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
VPS13AQ96RL7 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
VPS13AQ96RL7 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
VPS13AQ96RL7 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC17.27■□□□□ 0.35
VPS13AQ96RL7 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VPS13AQ96RL7 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC17.26■□□□□ 0.35
VPS13AQ96RL7 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC17.26■□□□□ 0.35
VPS13AQ96RL7 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC17.26■□□□□ 0.35
VPS13AQ96RL7 TSFM-210ENST00000550559 897 ntTSL 5 BASIC17.26■□□□□ 0.35
VPS13AQ96RL7 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC17.26■□□□□ 0.35
VPS13AQ96RL7 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
VPS13AQ96RL7 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC17.26■□□□□ 0.35
VPS13AQ96RL7 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC17.26■□□□□ 0.35
VPS13AQ96RL7 AL353593.2-201ENST00000602529 1483 ntBASIC17.26■□□□□ 0.35
VPS13AQ96RL7 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC17.26■□□□□ 0.35
VPS13AQ96RL7 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
VPS13AQ96RL7 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC17.26■□□□□ 0.35
VPS13AQ96RL7 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
VPS13AQ96RL7 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VPS13AQ96RL7 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
VPS13AQ96RL7 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
VPS13AQ96RL7 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC17.26■□□□□ 0.35
VPS13AQ96RL7 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC17.26■□□□□ 0.35
VPS13AQ96RL7 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC17.26■□□□□ 0.35
VPS13AQ96RL7 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC17.26■□□□□ 0.35
VPS13AQ96RL7 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC17.26■□□□□ 0.35
VPS13AQ96RL7 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC17.26■□□□□ 0.35
VPS13AQ96RL7 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC17.26■□□□□ 0.35
VPS13AQ96RL7 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VPS13AQ96RL7 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
VPS13AQ96RL7 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
VPS13AQ96RL7 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC17.26■□□□□ 0.35
VPS13AQ96RL7 SLC25A6P5-201ENST00000435663 894 ntBASIC17.26■□□□□ 0.35
VPS13AQ96RL7 AC140658.5-201ENST00000438532 169 ntBASIC17.26■□□□□ 0.35
VPS13AQ96RL7 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
VPS13AQ96RL7 Six3os1_5.1-201ENST00000611000 271 ntBASIC17.26■□□□□ 0.35
VPS13AQ96RL7 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC17.26■□□□□ 0.35
VPS13AQ96RL7 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VPS13AQ96RL7 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
VPS13AQ96RL7 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
VPS13AQ96RL7 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC17.25■□□□□ 0.35
VPS13AQ96RL7 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC17.25■□□□□ 0.35
VPS13AQ96RL7 ACTL9-202ENST00000612068 1252 ntBASIC17.25■□□□□ 0.35
VPS13AQ96RL7 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
VPS13AQ96RL7 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
VPS13AQ96RL7 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
VPS13AQ96RL7 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
VPS13AQ96RL7 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms