Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 AL732292.2-201ENST00000609649 430 ntBASIC17.53■□□□□ 0.4
VPS35Q96QK1 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC17.53■□□□□ 0.4
VPS35Q96QK1 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC17.53■□□□□ 0.4
VPS35Q96QK1 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC17.53■□□□□ 0.4
VPS35Q96QK1 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
VPS35Q96QK1 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VPS35Q96QK1 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VPS35Q96QK1 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC17.53■□□□□ 0.4
VPS35Q96QK1 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
VPS35Q96QK1 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC17.53■□□□□ 0.4
VPS35Q96QK1 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VPS35Q96QK1 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
VPS35Q96QK1 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC17.52■□□□□ 0.4
VPS35Q96QK1 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
VPS35Q96QK1 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC17.52■□□□□ 0.4
VPS35Q96QK1 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
VPS35Q96QK1 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC17.52■□□□□ 0.4
VPS35Q96QK1 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
VPS35Q96QK1 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC17.52■□□□□ 0.4
VPS35Q96QK1 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
VPS35Q96QK1 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
VPS35Q96QK1 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
VPS35Q96QK1 EMD-201ENST00000369835 966 ntTSL 3 BASIC17.52■□□□□ 0.4
VPS35Q96QK1 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC17.52■□□□□ 0.4
VPS35Q96QK1 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC17.52■□□□□ 0.4
VPS35Q96QK1 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
VPS35Q96QK1 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
VPS35Q96QK1 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC17.52■□□□□ 0.4
VPS35Q96QK1 AC005104.2-201ENST00000427818 678 ntBASIC17.52■□□□□ 0.4
VPS35Q96QK1 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
VPS35Q96QK1 KRT126P-201ENST00000549467 1181 ntBASIC17.52■□□□□ 0.4
VPS35Q96QK1 AC111152.3-201ENST00000569699 673 ntBASIC17.52■□□□□ 0.4
VPS35Q96QK1 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
VPS35Q96QK1 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC17.52■□□□□ 0.4
VPS35Q96QK1 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
VPS35Q96QK1 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC17.52■□□□□ 0.4
VPS35Q96QK1 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
VPS35Q96QK1 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC17.52■□□□□ 0.4
VPS35Q96QK1 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC17.52■□□□□ 0.4
VPS35Q96QK1 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
VPS35Q96QK1 NOC2LP2-201ENST00000407594 1944 ntBASIC17.52■□□□□ 0.4
VPS35Q96QK1 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.39
VPS35Q96QK1 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.39
VPS35Q96QK1 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
VPS35Q96QK1 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC17.52■□□□□ 0.39
VPS35Q96QK1 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.39
VPS35Q96QK1 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
VPS35Q96QK1 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
VPS35Q96QK1 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
VPS35Q96QK1 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
VPS35Q96QK1 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
VPS35Q96QK1 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
VPS35Q96QK1 AL133373.2-201ENST00000623187 2828 ntBASIC17.51■□□□□ 0.39
VPS35Q96QK1 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
VPS35Q96QK1 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
VPS35Q96QK1 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC17.51■□□□□ 0.39
VPS35Q96QK1 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC17.51■□□□□ 0.39
VPS35Q96QK1 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
VPS35Q96QK1 AL450487.1-201ENST00000426799 995 ntBASIC17.51■□□□□ 0.39
VPS35Q96QK1 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC17.51■□□□□ 0.39
VPS35Q96QK1 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC17.51■□□□□ 0.39
VPS35Q96QK1 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
VPS35Q96QK1 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC17.51■□□□□ 0.39
VPS35Q96QK1 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC17.51■□□□□ 0.39
VPS35Q96QK1 TMED1-207ENST00000591695 809 ntTSL 5 BASIC17.51■□□□□ 0.39
VPS35Q96QK1 LINC01711-201ENST00000598340 967 ntBASIC17.51■□□□□ 0.39
VPS35Q96QK1 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC17.51■□□□□ 0.39
VPS35Q96QK1 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC17.51■□□□□ 0.39
VPS35Q96QK1 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
VPS35Q96QK1 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
VPS35Q96QK1 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
VPS35Q96QK1 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC17.51■□□□□ 0.39
VPS35Q96QK1 NME9-203ENST00000383180 2133 ntTSL 2 BASIC17.51■□□□□ 0.39
VPS35Q96QK1 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC17.51■□□□□ 0.39
VPS35Q96QK1 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
VPS35Q96QK1 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
VPS35Q96QK1 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
VPS35Q96QK1 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
VPS35Q96QK1 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC17.51■□□□□ 0.39
VPS35Q96QK1 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC17.51■□□□□ 0.39
VPS35Q96QK1 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC17.51■□□□□ 0.39
VPS35Q96QK1 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
VPS35Q96QK1 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
VPS35Q96QK1 PC-208ENST00000529047 1607 ntTSL 3 BASIC17.5■□□□□ 0.39
VPS35Q96QK1 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
VPS35Q96QK1 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
VPS35Q96QK1 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC17.5■□□□□ 0.39
VPS35Q96QK1 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
VPS35Q96QK1 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
VPS35Q96QK1 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
VPS35Q96QK1 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
VPS35Q96QK1 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC17.5■□□□□ 0.39
VPS35Q96QK1 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
VPS35Q96QK1 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
VPS35Q96QK1 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
VPS35Q96QK1 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
VPS35Q96QK1 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
VPS35Q96QK1 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
VPS35Q96QK1 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC17.5■□□□□ 0.39
VPS35Q96QK1 AC002558.1-201ENST00000488906 803 ntBASIC17.5■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms