Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC17.89■□□□□ 0.45
CHFRQ96EP1 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CHFRQ96EP1 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC17.89■□□□□ 0.45
CHFRQ96EP1 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC17.89■□□□□ 0.45
CHFRQ96EP1 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
CHFRQ96EP1 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC17.89■□□□□ 0.45
CHFRQ96EP1 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC17.89■□□□□ 0.45
CHFRQ96EP1 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
CHFRQ96EP1 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CHFRQ96EP1 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC17.88■□□□□ 0.45
CHFRQ96EP1 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CHFRQ96EP1 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CHFRQ96EP1 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC17.88■□□□□ 0.45
CHFRQ96EP1 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
CHFRQ96EP1 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC17.88■□□□□ 0.45
CHFRQ96EP1 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
CHFRQ96EP1 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
CHFRQ96EP1 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
CHFRQ96EP1 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
CHFRQ96EP1 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CHFRQ96EP1 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC17.88■□□□□ 0.45
CHFRQ96EP1 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC17.88■□□□□ 0.45
CHFRQ96EP1 HTR5BP-201ENST00000430851 1154 ntBASIC17.88■□□□□ 0.45
CHFRQ96EP1 STK19B-204ENST00000512515 211 ntBASIC17.88■□□□□ 0.45
CHFRQ96EP1 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
CHFRQ96EP1 POLD4-207ENST00000531239 584 ntTSL 2 BASIC17.88■□□□□ 0.45
CHFRQ96EP1 MAL2-202ENST00000531508 892 ntTSL 3 BASIC17.88■□□□□ 0.45
CHFRQ96EP1 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC17.88■□□□□ 0.45
CHFRQ96EP1 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
CHFRQ96EP1 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
CHFRQ96EP1 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC17.88■□□□□ 0.45
CHFRQ96EP1 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CHFRQ96EP1 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC17.88■□□□□ 0.45
CHFRQ96EP1 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC17.88■□□□□ 0.45
CHFRQ96EP1 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CHFRQ96EP1 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC17.88■□□□□ 0.45
CHFRQ96EP1 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC17.88■□□□□ 0.45
CHFRQ96EP1 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
CHFRQ96EP1 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
CHFRQ96EP1 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC17.88■□□□□ 0.45
CHFRQ96EP1 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC17.88■□□□□ 0.45
CHFRQ96EP1 GPR89P-201ENST00000407924 1495 ntBASIC17.88■□□□□ 0.45
CHFRQ96EP1 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CHFRQ96EP1 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
CHFRQ96EP1 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC17.87■□□□□ 0.45
CHFRQ96EP1 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC17.87■□□□□ 0.45
CHFRQ96EP1 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
CHFRQ96EP1 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
CHFRQ96EP1 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
CHFRQ96EP1 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CHFRQ96EP1 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC17.87■□□□□ 0.45
CHFRQ96EP1 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
CHFRQ96EP1 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
CHFRQ96EP1 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
CHFRQ96EP1 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC17.87■□□□□ 0.45
CHFRQ96EP1 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
CHFRQ96EP1 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC17.87■□□□□ 0.45
CHFRQ96EP1 FLYWCH1P1-201ENST00000460917 1874 ntBASIC17.87■□□□□ 0.45
CHFRQ96EP1 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC17.87■□□□□ 0.45
CHFRQ96EP1 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC17.87■□□□□ 0.45
CHFRQ96EP1 PTCHD3P3-201ENST00000403073 906 ntBASIC17.87■□□□□ 0.45
CHFRQ96EP1 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC17.87■□□□□ 0.45
CHFRQ96EP1 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC17.87■□□□□ 0.45
CHFRQ96EP1 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC17.87■□□□□ 0.45
CHFRQ96EP1 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC17.87■□□□□ 0.45
CHFRQ96EP1 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC17.87■□□□□ 0.45
CHFRQ96EP1 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
CHFRQ96EP1 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC17.87■□□□□ 0.45
CHFRQ96EP1 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC17.87■□□□□ 0.45
CHFRQ96EP1 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CHFRQ96EP1 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CHFRQ96EP1 AC009336.1-201ENST00000608941 1553 ntBASIC17.87■□□□□ 0.45
CHFRQ96EP1 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC17.87■□□□□ 0.45
CHFRQ96EP1 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CHFRQ96EP1 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
CHFRQ96EP1 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC17.87■□□□□ 0.45
CHFRQ96EP1 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC17.86■□□□□ 0.45
CHFRQ96EP1 AC097637.2-201ENST00000624096 1997 ntBASIC17.86■□□□□ 0.45
CHFRQ96EP1 REXO1L9P-201ENST00000604264 2108 ntBASIC17.86■□□□□ 0.45
CHFRQ96EP1 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC17.86■□□□□ 0.45
CHFRQ96EP1 AP000997.3-201ENST00000623333 2250 ntBASIC17.86■□□□□ 0.45
CHFRQ96EP1 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CHFRQ96EP1 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CHFRQ96EP1 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CHFRQ96EP1 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC17.86■□□□□ 0.45
CHFRQ96EP1 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC17.86■□□□□ 0.45
CHFRQ96EP1 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
CHFRQ96EP1 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC17.86■□□□□ 0.45
CHFRQ96EP1 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC17.86■□□□□ 0.45
CHFRQ96EP1 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC17.86■□□□□ 0.45
CHFRQ96EP1 CFL1-202ENST00000524553 860 ntTSL 2 BASIC17.86■□□□□ 0.45
CHFRQ96EP1 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC17.86■□□□□ 0.45
CHFRQ96EP1 AL353135.1-201ENST00000606729 504 ntBASIC17.86■□□□□ 0.45
CHFRQ96EP1 AL078644.1-201ENST00000609881 752 ntBASIC17.86■□□□□ 0.45
CHFRQ96EP1 AC116407.2-201ENST00000613639 860 ntBASIC17.86■□□□□ 0.45
CHFRQ96EP1 C20orf181-201ENST00000623918 480 ntBASIC17.86■□□□□ 0.45
CHFRQ96EP1 AC010507.1-201ENST00000633895 436 ntBASIC17.86■□□□□ 0.45
CHFRQ96EP1 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
CHFRQ96EP1 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CHFRQ96EP1 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC17.86■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms