Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 AC104692.2-201ENST00000603054 253 ntBASIC18.12■□□□□ 0.49
SKA1Q96BD8 GXYLT1P4-201ENST00000613576 1192 ntBASIC18.12■□□□□ 0.49
SKA1Q96BD8 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC18.12■□□□□ 0.49
SKA1Q96BD8 ANKRD20A8P-203ENST00000641373 517 ntBASIC18.12■□□□□ 0.49
SKA1Q96BD8 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
SKA1Q96BD8 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SKA1Q96BD8 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC18.12■□□□□ 0.49
SKA1Q96BD8 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC18.12■□□□□ 0.49
SKA1Q96BD8 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC18.12■□□□□ 0.49
SKA1Q96BD8 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SKA1Q96BD8 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC18.12■□□□□ 0.49
SKA1Q96BD8 NSUN5P1-202ENST00000421140 1535 ntBASIC18.12■□□□□ 0.49
SKA1Q96BD8 NSUN5P2-203ENST00000457352 1529 ntBASIC18.12■□□□□ 0.49
SKA1Q96BD8 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
SKA1Q96BD8 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SKA1Q96BD8 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
SKA1Q96BD8 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SKA1Q96BD8 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SKA1Q96BD8 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
SKA1Q96BD8 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC18.11■□□□□ 0.49
SKA1Q96BD8 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SKA1Q96BD8 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SKA1Q96BD8 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
SKA1Q96BD8 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SKA1Q96BD8 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC18.11■□□□□ 0.49
SKA1Q96BD8 AC009078.2-202ENST00000463353 338 ntBASIC18.11■□□□□ 0.49
SKA1Q96BD8 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SKA1Q96BD8 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC18.11■□□□□ 0.49
SKA1Q96BD8 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC18.11■□□□□ 0.49
SKA1Q96BD8 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC18.11■□□□□ 0.49
SKA1Q96BD8 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC18.11■□□□□ 0.49
SKA1Q96BD8 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC18.11■□□□□ 0.49
SKA1Q96BD8 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC18.11■□□□□ 0.49
SKA1Q96BD8 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC18.11■□□□□ 0.49
SKA1Q96BD8 CALM3-211ENST00000598871 561 ntTSL 4 BASIC18.11■□□□□ 0.49
SKA1Q96BD8 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC18.11■□□□□ 0.49
SKA1Q96BD8 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC18.11■□□□□ 0.49
SKA1Q96BD8 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SKA1Q96BD8 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC18.11■□□□□ 0.49
SKA1Q96BD8 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SKA1Q96BD8 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
SKA1Q96BD8 AL163051.1-201ENST00000569214 1512 ntBASIC18.11■□□□□ 0.49
SKA1Q96BD8 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
SKA1Q96BD8 HLA-DQB1-201ENST00000374943 1656 ntBASIC18.11■□□□□ 0.49
SKA1Q96BD8 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC18.11■□□□□ 0.49
SKA1Q96BD8 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SKA1Q96BD8 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SKA1Q96BD8 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC18.11■□□□□ 0.49
SKA1Q96BD8 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SKA1Q96BD8 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
SKA1Q96BD8 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
SKA1Q96BD8 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC18.11■□□□□ 0.49
SKA1Q96BD8 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SKA1Q96BD8 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SKA1Q96BD8 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC18.11■□□□□ 0.49
SKA1Q96BD8 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SKA1Q96BD8 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SKA1Q96BD8 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC18.1■□□□□ 0.49
SKA1Q96BD8 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
SKA1Q96BD8 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
SKA1Q96BD8 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
SKA1Q96BD8 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SKA1Q96BD8 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC18.1■□□□□ 0.49
SKA1Q96BD8 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SKA1Q96BD8 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
SKA1Q96BD8 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SKA1Q96BD8 HR-201ENST00000312841 5351 ntTSL 5 BASIC18.1■□□□□ 0.49
SKA1Q96BD8 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
SKA1Q96BD8 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
SKA1Q96BD8 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SKA1Q96BD8 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SKA1Q96BD8 KRT8P50-201ENST00000562022 1438 ntBASIC18.1■□□□□ 0.49
SKA1Q96BD8 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC18.1■□□□□ 0.49
SKA1Q96BD8 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SKA1Q96BD8 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
SKA1Q96BD8 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC18.1■□□□□ 0.49
SKA1Q96BD8 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
SKA1Q96BD8 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC18.1■□□□□ 0.49
SKA1Q96BD8 SAPCD2P3-201ENST00000455031 850 ntBASIC18.1■□□□□ 0.49
SKA1Q96BD8 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC18.1■□□□□ 0.49
SKA1Q96BD8 AC106795.1-205ENST00000512851 1056 ntBASIC18.1■□□□□ 0.49
SKA1Q96BD8 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC18.1■□□□□ 0.49
SKA1Q96BD8 AP002469.2-201ENST00000531724 424 ntBASIC18.1■□□□□ 0.49
SKA1Q96BD8 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SKA1Q96BD8 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC18.1■□□□□ 0.49
SKA1Q96BD8 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC18.1■□□□□ 0.49
SKA1Q96BD8 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC18.1■□□□□ 0.49
SKA1Q96BD8 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
SKA1Q96BD8 CCNC-219ENST00000627680 896 ntTSL 5 BASIC18.1■□□□□ 0.49
SKA1Q96BD8 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SKA1Q96BD8 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC18.1■□□□□ 0.49
SKA1Q96BD8 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
SKA1Q96BD8 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC18.1■□□□□ 0.49
SKA1Q96BD8 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
SKA1Q96BD8 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SKA1Q96BD8 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
SKA1Q96BD8 BANP-227ENST00000626016 2144 ntTSL 2 BASIC18.1■□□□□ 0.49
SKA1Q96BD8 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SKA1Q96BD8 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
SKA1Q96BD8 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 77.6 ms