Protein–RNA interactions for Protein: Q6A162

KRT40, Keratin, type I cytoskeletal 40, humanhuman

Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT40Q6A162 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
KRT40Q6A162 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
KRT40Q6A162 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
KRT40Q6A162 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
KRT40Q6A162 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
KRT40Q6A162 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC20.43■□□□□ 0.86
KRT40Q6A162 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
KRT40Q6A162 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
KRT40Q6A162 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC20.43■□□□□ 0.86
KRT40Q6A162 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
KRT40Q6A162 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
KRT40Q6A162 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
KRT40Q6A162 BX276092.5-203ENST00000456199 560 ntBASIC20.43■□□□□ 0.86
KRT40Q6A162 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
KRT40Q6A162 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
KRT40Q6A162 AC005336.2-201ENST00000593183 939 ntBASIC20.43■□□□□ 0.86
KRT40Q6A162 AL121672.3-201ENST00000608644 468 ntBASIC20.43■□□□□ 0.86
KRT40Q6A162 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
KRT40Q6A162 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
KRT40Q6A162 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
KRT40Q6A162 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
KRT40Q6A162 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
KRT40Q6A162 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
KRT40Q6A162 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC20.43■□□□□ 0.86
KRT40Q6A162 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
KRT40Q6A162 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
KRT40Q6A162 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
KRT40Q6A162 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
KRT40Q6A162 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
KRT40Q6A162 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC20.43■□□□□ 0.86
KRT40Q6A162 TBC1D3P5-201ENST00000579401 1545 ntBASIC20.43■□□□□ 0.86
KRT40Q6A162 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC20.43■□□□□ 0.86
KRT40Q6A162 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC20.42■□□□□ 0.86
KRT40Q6A162 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
KRT40Q6A162 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC20.42■□□□□ 0.86
KRT40Q6A162 AC108860.2-201ENST00000562760 2183 ntBASIC20.42■□□□□ 0.86
KRT40Q6A162 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC20.42■□□□□ 0.86
KRT40Q6A162 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
KRT40Q6A162 SIRPAP1-201ENST00000448467 1770 ntBASIC20.42■□□□□ 0.86
KRT40Q6A162 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC20.42■□□□□ 0.86
KRT40Q6A162 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
KRT40Q6A162 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
KRT40Q6A162 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
KRT40Q6A162 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
KRT40Q6A162 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
KRT40Q6A162 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
KRT40Q6A162 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
KRT40Q6A162 CHCHD2P8-201ENST00000429873 447 ntBASIC20.42■□□□□ 0.86
KRT40Q6A162 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
KRT40Q6A162 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
KRT40Q6A162 AC091607.1-201ENST00000490318 1060 ntBASIC20.42■□□□□ 0.86
KRT40Q6A162 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
KRT40Q6A162 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC20.42■□□□□ 0.86
KRT40Q6A162 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC20.42■□□□□ 0.86
KRT40Q6A162 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC20.42■□□□□ 0.86
KRT40Q6A162 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
KRT40Q6A162 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
KRT40Q6A162 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC20.42■□□□□ 0.86
KRT40Q6A162 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
KRT40Q6A162 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
KRT40Q6A162 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
KRT40Q6A162 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
KRT40Q6A162 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC20.41■□□□□ 0.86
KRT40Q6A162 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
KRT40Q6A162 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
KRT40Q6A162 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC20.41■□□□□ 0.86
KRT40Q6A162 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC20.41■□□□□ 0.86
KRT40Q6A162 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
KRT40Q6A162 LTB4R2-202ENST00000528054 3092 ntBASIC20.41■□□□□ 0.86
KRT40Q6A162 BANP-227ENST00000626016 2144 ntTSL 2 BASIC20.41■□□□□ 0.86
KRT40Q6A162 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
KRT40Q6A162 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
KRT40Q6A162 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
KRT40Q6A162 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
KRT40Q6A162 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
KRT40Q6A162 AC005104.2-201ENST00000427818 678 ntBASIC20.41■□□□□ 0.86
KRT40Q6A162 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC20.41■□□□□ 0.86
KRT40Q6A162 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC20.41■□□□□ 0.86
KRT40Q6A162 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
KRT40Q6A162 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
KRT40Q6A162 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC20.41■□□□□ 0.86
KRT40Q6A162 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
KRT40Q6A162 AC125634.1-201ENST00000438758 1403 ntBASIC20.41■□□□□ 0.86
KRT40Q6A162 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
KRT40Q6A162 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
KRT40Q6A162 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC20.41■□□□□ 0.86
KRT40Q6A162 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
KRT40Q6A162 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
KRT40Q6A162 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
KRT40Q6A162 HCG11-201ENST00000411553 5696 ntBASIC20.41■□□□□ 0.86
KRT40Q6A162 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
KRT40Q6A162 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
KRT40Q6A162 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
KRT40Q6A162 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC20.41■□□□□ 0.86
KRT40Q6A162 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC20.41■□□□□ 0.86
KRT40Q6A162 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
KRT40Q6A162 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC20.4■□□□□ 0.86
KRT40Q6A162 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
KRT40Q6A162 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
KRT40Q6A162 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms