Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
RC3H1Q5TC82 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
RC3H1Q5TC82 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC22.03■■□□□ 1.12
RC3H1Q5TC82 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
RC3H1Q5TC82 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC22.03■■□□□ 1.12
RC3H1Q5TC82 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC22.03■■□□□ 1.12
RC3H1Q5TC82 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC22.03■■□□□ 1.12
RC3H1Q5TC82 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC22.03■■□□□ 1.12
RC3H1Q5TC82 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC22.03■■□□□ 1.12
RC3H1Q5TC82 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
RC3H1Q5TC82 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC22.02■■□□□ 1.12
RC3H1Q5TC82 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC22.02■■□□□ 1.12
RC3H1Q5TC82 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC22.02■■□□□ 1.12
RC3H1Q5TC82 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
RC3H1Q5TC82 KLK8-202ENST00000320838 456 ntTSL 5 BASIC22.02■■□□□ 1.12
RC3H1Q5TC82 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
RC3H1Q5TC82 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
RC3H1Q5TC82 HNRNPFP1-201ENST00000391730 1133 ntBASIC22.02■■□□□ 1.12
RC3H1Q5TC82 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC22.02■■□□□ 1.12
RC3H1Q5TC82 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC22.02■■□□□ 1.12
RC3H1Q5TC82 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC22.02■■□□□ 1.12
RC3H1Q5TC82 AC190387.1-201ENST00000551683 408 ntBASIC22.02■■□□□ 1.12
RC3H1Q5TC82 DUX4L27-201ENST00000554796 1261 ntBASIC22.02■■□□□ 1.12
RC3H1Q5TC82 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC22.02■■□□□ 1.12
RC3H1Q5TC82 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC22.02■■□□□ 1.12
RC3H1Q5TC82 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC22.02■■□□□ 1.12
RC3H1Q5TC82 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
RC3H1Q5TC82 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC22.02■■□□□ 1.12
RC3H1Q5TC82 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC22.02■■□□□ 1.12
RC3H1Q5TC82 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC22.02■■□□□ 1.11
RC3H1Q5TC82 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.11
RC3H1Q5TC82 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC22.02■■□□□ 1.11
RC3H1Q5TC82 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
RC3H1Q5TC82 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
RC3H1Q5TC82 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
RC3H1Q5TC82 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC22.01■■□□□ 1.11
RC3H1Q5TC82 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC22.01■■□□□ 1.11
RC3H1Q5TC82 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
RC3H1Q5TC82 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC22.01■■□□□ 1.11
RC3H1Q5TC82 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC22.01■■□□□ 1.11
RC3H1Q5TC82 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
RC3H1Q5TC82 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC22.01■■□□□ 1.11
RC3H1Q5TC82 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
RC3H1Q5TC82 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC22.01■■□□□ 1.11
RC3H1Q5TC82 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC22.01■■□□□ 1.11
RC3H1Q5TC82 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
RC3H1Q5TC82 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
RC3H1Q5TC82 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC22.01■■□□□ 1.11
RC3H1Q5TC82 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
RC3H1Q5TC82 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
RC3H1Q5TC82 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC22.01■■□□□ 1.11
RC3H1Q5TC82 AC069262.1-201ENST00000539058 672 ntBASIC22.01■■□□□ 1.11
RC3H1Q5TC82 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
RC3H1Q5TC82 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
RC3H1Q5TC82 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC22.01■■□□□ 1.11
RC3H1Q5TC82 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
RC3H1Q5TC82 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC22.01■■□□□ 1.11
RC3H1Q5TC82 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC22.01■■□□□ 1.11
RC3H1Q5TC82 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC22■■□□□ 1.11
RC3H1Q5TC82 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC22■■□□□ 1.11
RC3H1Q5TC82 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
RC3H1Q5TC82 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC22■■□□□ 1.11
RC3H1Q5TC82 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC22■■□□□ 1.11
RC3H1Q5TC82 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC22■■□□□ 1.11
RC3H1Q5TC82 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC22■■□□□ 1.11
RC3H1Q5TC82 AC087163.2-201ENST00000457299 853 ntBASIC22■■□□□ 1.11
RC3H1Q5TC82 AC069335.1-201ENST00000489972 472 ntBASIC22■■□□□ 1.11
RC3H1Q5TC82 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC22■■□□□ 1.11
RC3H1Q5TC82 AC051619.7-201ENST00000568314 623 ntBASIC22■■□□□ 1.11
RC3H1Q5TC82 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC22■■□□□ 1.11
RC3H1Q5TC82 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC22■■□□□ 1.11
RC3H1Q5TC82 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC22■■□□□ 1.11
RC3H1Q5TC82 AL645728.2-201ENST00000641974 660 ntBASIC22■■□□□ 1.11
RC3H1Q5TC82 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
RC3H1Q5TC82 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC22■■□□□ 1.11
RC3H1Q5TC82 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC22■■□□□ 1.11
RC3H1Q5TC82 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
RC3H1Q5TC82 AL135999.2-201ENST00000622438 1686 ntBASIC22■■□□□ 1.11
RC3H1Q5TC82 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
RC3H1Q5TC82 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC22■■□□□ 1.11
RC3H1Q5TC82 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
RC3H1Q5TC82 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC22■■□□□ 1.11
RC3H1Q5TC82 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC22■■□□□ 1.11
RC3H1Q5TC82 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC22■■□□□ 1.11
RC3H1Q5TC82 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC22■■□□□ 1.11
RC3H1Q5TC82 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
RC3H1Q5TC82 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC21.99■■□□□ 1.11
RC3H1Q5TC82 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
RC3H1Q5TC82 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
RC3H1Q5TC82 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC21.99■■□□□ 1.11
RC3H1Q5TC82 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
RC3H1Q5TC82 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC21.99■■□□□ 1.11
RC3H1Q5TC82 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
RC3H1Q5TC82 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
RC3H1Q5TC82 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC21.99■■□□□ 1.11
RC3H1Q5TC82 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
RC3H1Q5TC82 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC21.99■■□□□ 1.11
RC3H1Q5TC82 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC21.99■■□□□ 1.11
RC3H1Q5TC82 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC21.99■■□□□ 1.11
RC3H1Q5TC82 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms