Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 AC108860.2-201ENST00000562760 2183 ntBASIC18.37■□□□□ 0.53
CDH6P55285 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CDH6P55285 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC18.37■□□□□ 0.53
CDH6P55285 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CDH6P55285 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CDH6P55285 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC18.37■□□□□ 0.53
CDH6P55285 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC18.37■□□□□ 0.53
CDH6P55285 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CDH6P55285 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CDH6P55285 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CDH6P55285 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC18.37■□□□□ 0.53
CDH6P55285 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CDH6P55285 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CDH6P55285 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
CDH6P55285 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CDH6P55285 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC18.37■□□□□ 0.53
CDH6P55285 AC010460.3-201ENST00000511359 1579 ntBASIC18.37■□□□□ 0.53
CDH6P55285 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
CDH6P55285 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC18.37■□□□□ 0.53
CDH6P55285 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CDH6P55285 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CDH6P55285 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
CDH6P55285 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC18.36■□□□□ 0.53
CDH6P55285 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CDH6P55285 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CDH6P55285 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CDH6P55285 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CDH6P55285 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CDH6P55285 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
CDH6P55285 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC18.36■□□□□ 0.53
CDH6P55285 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CDH6P55285 BX276092.5-203ENST00000456199 560 ntBASIC18.36■□□□□ 0.53
CDH6P55285 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
CDH6P55285 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC18.36■□□□□ 0.53
CDH6P55285 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC18.36■□□□□ 0.53
CDH6P55285 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC18.36■□□□□ 0.53
CDH6P55285 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC18.36■□□□□ 0.53
CDH6P55285 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
CDH6P55285 AC097374.2-201ENST00000618617 1306 ntBASIC18.36■□□□□ 0.53
CDH6P55285 AC116407.4-201ENST00000623319 1061 ntBASIC18.36■□□□□ 0.53
CDH6P55285 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
CDH6P55285 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC18.36■□□□□ 0.53
CDH6P55285 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC18.36■□□□□ 0.53
CDH6P55285 CROCCP2-202ENST00000412962 2773 ntBASIC18.36■□□□□ 0.53
CDH6P55285 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CDH6P55285 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CDH6P55285 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CDH6P55285 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CDH6P55285 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CDH6P55285 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
CDH6P55285 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC18.35■□□□□ 0.53
CDH6P55285 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
CDH6P55285 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CDH6P55285 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC18.35■□□□□ 0.53
CDH6P55285 AL023806.1-201ENST00000603994 1649 ntBASIC18.35■□□□□ 0.53
CDH6P55285 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
CDH6P55285 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CDH6P55285 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CDH6P55285 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC18.35■□□□□ 0.53
CDH6P55285 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
CDH6P55285 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CDH6P55285 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CDH6P55285 ARMC10P1-201ENST00000313754 855 ntBASIC18.35■□□□□ 0.53
CDH6P55285 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC18.35■□□□□ 0.53
CDH6P55285 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CDH6P55285 PCED1CP-201ENST00000419887 785 ntBASIC18.35■□□□□ 0.53
CDH6P55285 AL845331.1-201ENST00000424978 1190 ntBASIC18.35■□□□□ 0.53
CDH6P55285 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
CDH6P55285 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC18.35■□□□□ 0.53
CDH6P55285 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CDH6P55285 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CDH6P55285 AC011840.4-201ENST00000578471 627 ntBASIC18.35■□□□□ 0.53
CDH6P55285 TMED1-207ENST00000591695 809 ntTSL 5 BASIC18.35■□□□□ 0.53
CDH6P55285 AL121672.3-201ENST00000608644 468 ntBASIC18.35■□□□□ 0.53
CDH6P55285 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
CDH6P55285 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
CDH6P55285 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
CDH6P55285 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CDH6P55285 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
CDH6P55285 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
CDH6P55285 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CDH6P55285 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CDH6P55285 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CDH6P55285 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
CDH6P55285 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CDH6P55285 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC18.34■□□□□ 0.53
CDH6P55285 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CDH6P55285 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
CDH6P55285 IER3-202ENST00000376377 1350 ntBASIC18.34■□□□□ 0.53
CDH6P55285 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC18.34■□□□□ 0.53
CDH6P55285 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC18.34■□□□□ 0.53
CDH6P55285 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CDH6P55285 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC18.34■□□□□ 0.53
CDH6P55285 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CDH6P55285 BET1L-202ENST00000332865 533 ntTSL 5 BASIC18.34■□□□□ 0.53
CDH6P55285 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CDH6P55285 AC005104.2-201ENST00000427818 678 ntBASIC18.34■□□□□ 0.53
CDH6P55285 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
CDH6P55285 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CDH6P55285 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC18.34■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms