Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VCPP55072 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VCPP55072 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC18.9■□□□□ 0.62
VCPP55072 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VCPP55072 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VCPP55072 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC18.9■□□□□ 0.62
VCPP55072 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VCPP55072 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VCPP55072 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
VCPP55072 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VCPP55072 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.62
VCPP55072 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
VCPP55072 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.62
VCPP55072 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.62
VCPP55072 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
VCPP55072 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
VCPP55072 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
VCPP55072 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC18.89■□□□□ 0.62
VCPP55072 GNE-204ENST00000539208 2190 ntTSL 2 BASIC18.89■□□□□ 0.62
VCPP55072 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
VCPP55072 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
VCPP55072 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
VCPP55072 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
VCPP55072 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
VCPP55072 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
VCPP55072 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC18.89■□□□□ 0.61
VCPP55072 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
VCPP55072 NMU-202ENST00000505262 693 ntTSL 3 BASIC18.89■□□□□ 0.61
VCPP55072 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC18.89■□□□□ 0.61
VCPP55072 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
VCPP55072 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
VCPP55072 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC18.89■□□□□ 0.61
VCPP55072 AC134684.3-201ENST00000641758 218 ntBASIC18.89■□□□□ 0.61
VCPP55072 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
VCPP55072 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
VCPP55072 WAC-202ENST00000347934 2839 ntTSL 5 BASIC18.89■□□□□ 0.61
VCPP55072 LINC00896-202ENST00000609602 2128 ntBASIC18.89■□□□□ 0.61
VCPP55072 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
VCPP55072 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
VCPP55072 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
VCPP55072 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
VCPP55072 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
VCPP55072 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
VCPP55072 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VCPP55072 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
VCPP55072 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC18.88■□□□□ 0.61
VCPP55072 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VCPP55072 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC18.88■□□□□ 0.61
VCPP55072 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC18.88■□□□□ 0.61
VCPP55072 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
VCPP55072 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VCPP55072 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VCPP55072 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VCPP55072 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VCPP55072 YBX2P1-201ENST00000394192 760 ntBASIC18.88■□□□□ 0.61
VCPP55072 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC18.88■□□□□ 0.61
VCPP55072 POM121L3P-201ENST00000419331 1163 ntBASIC18.88■□□□□ 0.61
VCPP55072 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC18.88■□□□□ 0.61
VCPP55072 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
VCPP55072 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
VCPP55072 MIR5100-201ENST00000579544 119 ntBASIC18.88■□□□□ 0.61
VCPP55072 BNIP3P18-201ENST00000593976 575 ntBASIC18.88■□□□□ 0.61
VCPP55072 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VCPP55072 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC18.88■□□□□ 0.61
VCPP55072 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
VCPP55072 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
VCPP55072 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
VCPP55072 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
VCPP55072 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC18.88■□□□□ 0.61
VCPP55072 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
VCPP55072 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC18.88■□□□□ 0.61
VCPP55072 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
VCPP55072 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC18.88■□□□□ 0.61
VCPP55072 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC18.88■□□□□ 0.61
VCPP55072 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
VCPP55072 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VCPP55072 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
VCPP55072 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VCPP55072 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
VCPP55072 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC18.87■□□□□ 0.61
VCPP55072 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
VCPP55072 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
VCPP55072 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
VCPP55072 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
VCPP55072 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
VCPP55072 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
VCPP55072 HLA-DQB1-201ENST00000374943 1656 ntBASIC18.87■□□□□ 0.61
VCPP55072 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC18.87■□□□□ 0.61
VCPP55072 CSF3-203ENST00000394148 622 ntTSL 3 BASIC18.87■□□□□ 0.61
VCPP55072 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
VCPP55072 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC18.87■□□□□ 0.61
VCPP55072 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
VCPP55072 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC18.87■□□□□ 0.61
VCPP55072 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
VCPP55072 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
VCPP55072 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
VCPP55072 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC18.87■□□□□ 0.61
VCPP55072 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC18.87■□□□□ 0.61
VCPP55072 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC18.87■□□□□ 0.61
VCPP55072 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms