Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC18.72■□□□□ 0.59
COL4A4P53420 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
COL4A4P53420 REXO1L9P-201ENST00000604264 2108 ntBASIC18.72■□□□□ 0.59
COL4A4P53420 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL4A4P53420 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL4A4P53420 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
COL4A4P53420 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC18.71■□□□□ 0.59
COL4A4P53420 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC18.71■□□□□ 0.59
COL4A4P53420 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC18.71■□□□□ 0.59
COL4A4P53420 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL4A4P53420 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL4A4P53420 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC18.71■□□□□ 0.59
COL4A4P53420 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL4A4P53420 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC18.71■□□□□ 0.59
COL4A4P53420 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC18.71■□□□□ 0.59
COL4A4P53420 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC18.71■□□□□ 0.59
COL4A4P53420 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL4A4P53420 GID4-202ENST00000376345 1391 ntTSL 3 BASIC18.71■□□□□ 0.59
COL4A4P53420 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
COL4A4P53420 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL4A4P53420 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL4A4P53420 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL4A4P53420 ACTG1P14-201ENST00000446382 1122 ntBASIC18.71■□□□□ 0.59
COL4A4P53420 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC18.71■□□□□ 0.59
COL4A4P53420 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC18.71■□□□□ 0.59
COL4A4P53420 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.59
COL4A4P53420 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC18.71■□□□□ 0.59
COL4A4P53420 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC18.71■□□□□ 0.59
COL4A4P53420 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL4A4P53420 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
COL4A4P53420 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
COL4A4P53420 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL4A4P53420 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
COL4A4P53420 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL4A4P53420 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
COL4A4P53420 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
COL4A4P53420 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL4A4P53420 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC18.7■□□□□ 0.58
COL4A4P53420 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
COL4A4P53420 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL4A4P53420 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC18.7■□□□□ 0.58
COL4A4P53420 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC18.7■□□□□ 0.58
COL4A4P53420 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
COL4A4P53420 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC18.7■□□□□ 0.58
COL4A4P53420 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL4A4P53420 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC18.7■□□□□ 0.58
COL4A4P53420 IGHV3OR16-6-201ENST00000568775 360 ntBASIC18.7■□□□□ 0.58
COL4A4P53420 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC18.7■□□□□ 0.58
COL4A4P53420 CYB561-216ENST00000582297 897 ntTSL 3 BASIC18.7■□□□□ 0.58
COL4A4P53420 AC012645.4-201ENST00000610691 1061 ntBASIC18.7■□□□□ 0.58
COL4A4P53420 AQP6-205ENST00000618286 829 ntTSL 5 BASIC18.7■□□□□ 0.58
COL4A4P53420 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
COL4A4P53420 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC18.7■□□□□ 0.58
COL4A4P53420 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL4A4P53420 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC18.7■□□□□ 0.58
COL4A4P53420 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
COL4A4P53420 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL4A4P53420 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
COL4A4P53420 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL4A4P53420 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL4A4P53420 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL4A4P53420 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
COL4A4P53420 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL4A4P53420 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL4A4P53420 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
COL4A4P53420 NOC2LP1-202ENST00000452600 2235 ntBASIC18.7■□□□□ 0.58
COL4A4P53420 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL4A4P53420 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
COL4A4P53420 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC18.69■□□□□ 0.58
COL4A4P53420 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL4A4P53420 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
COL4A4P53420 NKTR-203ENST00000442970 646 ntTSL 2 BASIC18.69■□□□□ 0.58
COL4A4P53420 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC18.69■□□□□ 0.58
COL4A4P53420 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL4A4P53420 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
COL4A4P53420 TK1-204ENST00000590430 683 ntTSL 3 BASIC18.69■□□□□ 0.58
COL4A4P53420 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC18.69■□□□□ 0.58
COL4A4P53420 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
COL4A4P53420 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL4A4P53420 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC18.69■□□□□ 0.58
COL4A4P53420 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL4A4P53420 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
COL4A4P53420 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL4A4P53420 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC18.69■□□□□ 0.58
COL4A4P53420 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
COL4A4P53420 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
COL4A4P53420 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL4A4P53420 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL4A4P53420 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC18.69■□□□□ 0.58
COL4A4P53420 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC18.69■□□□□ 0.58
COL4A4P53420 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC18.69■□□□□ 0.58
COL4A4P53420 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL4A4P53420 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
COL4A4P53420 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC18.69■□□□□ 0.58
COL4A4P53420 AC103564.2-201ENST00000432853 1299 ntBASIC18.69■□□□□ 0.58
COL4A4P53420 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC18.69■□□□□ 0.58
COL4A4P53420 INO80C-206ENST00000586489 594 ntTSL 3 BASIC18.69■□□□□ 0.58
COL4A4P53420 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC18.69■□□□□ 0.58
COL4A4P53420 YTHDF3-AS1-201ENST00000603538 718 ntBASIC18.69■□□□□ 0.58
COL4A4P53420 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms