Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC18.2■□□□□ 0.5
NEK3P51956 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
NEK3P51956 AC093010.1-201ENST00000473625 1624 ntBASIC18.2■□□□□ 0.5
NEK3P51956 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
NEK3P51956 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
NEK3P51956 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
NEK3P51956 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
NEK3P51956 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
NEK3P51956 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
NEK3P51956 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
NEK3P51956 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
NEK3P51956 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
NEK3P51956 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
NEK3P51956 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC18.2■□□□□ 0.5
NEK3P51956 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
NEK3P51956 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
NEK3P51956 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC18.2■□□□□ 0.5
NEK3P51956 ABR-204ENST00000543210 1049 ntTSL 2 BASIC18.2■□□□□ 0.5
NEK3P51956 AC111152.3-201ENST00000569699 673 ntBASIC18.2■□□□□ 0.5
NEK3P51956 ABR-217ENST00000572441 563 ntTSL 4 BASIC18.2■□□□□ 0.5
NEK3P51956 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC18.2■□□□□ 0.5
NEK3P51956 AL121894.2-201ENST00000602977 491 ntBASIC18.2■□□□□ 0.5
NEK3P51956 AC084018.2-201ENST00000613093 2607 ntBASIC18.2■□□□□ 0.5
NEK3P51956 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
NEK3P51956 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
NEK3P51956 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
NEK3P51956 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
NEK3P51956 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
NEK3P51956 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
NEK3P51956 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
NEK3P51956 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
NEK3P51956 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
NEK3P51956 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
NEK3P51956 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
NEK3P51956 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
NEK3P51956 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
NEK3P51956 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC18.19■□□□□ 0.5
NEK3P51956 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
NEK3P51956 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
NEK3P51956 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
NEK3P51956 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
NEK3P51956 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
NEK3P51956 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
NEK3P51956 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
NEK3P51956 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
NEK3P51956 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
NEK3P51956 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
NEK3P51956 TPM4P1-201ENST00000436100 807 ntBASIC18.19■□□□□ 0.5
NEK3P51956 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC18.19■□□□□ 0.5
NEK3P51956 FOSL1P1-201ENST00000511041 816 ntBASIC18.19■□□□□ 0.5
NEK3P51956 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC18.19■□□□□ 0.5
NEK3P51956 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC18.19■□□□□ 0.5
NEK3P51956 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC18.19■□□□□ 0.5
NEK3P51956 AL121772.3-201ENST00000610840 674 ntBASIC18.19■□□□□ 0.5
NEK3P51956 IRF5-214ENST00000613821 595 ntTSL 5 BASIC18.19■□□□□ 0.5
NEK3P51956 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
NEK3P51956 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
NEK3P51956 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
NEK3P51956 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
NEK3P51956 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
NEK3P51956 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
NEK3P51956 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
NEK3P51956 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
NEK3P51956 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
NEK3P51956 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
NEK3P51956 AL139384.1-201ENST00000612143 3047 ntBASIC18.18■□□□□ 0.5
NEK3P51956 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
NEK3P51956 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
NEK3P51956 LINC00602-201ENST00000629776 2065 ntBASIC18.18■□□□□ 0.5
NEK3P51956 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
NEK3P51956 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
NEK3P51956 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
NEK3P51956 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
NEK3P51956 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
NEK3P51956 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
NEK3P51956 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC18.18■□□□□ 0.5
NEK3P51956 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC18.18■□□□□ 0.5
NEK3P51956 KIRREL3-AS3-201ENST00000404882 831 ntBASIC18.18■□□□□ 0.5
NEK3P51956 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
NEK3P51956 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC18.18■□□□□ 0.5
NEK3P51956 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
NEK3P51956 AC099336.1-202ENST00000602961 463 ntBASIC18.18■□□□□ 0.5
NEK3P51956 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC18.18■□□□□ 0.5
NEK3P51956 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
NEK3P51956 AC009154.2-201ENST00000621177 724 ntBASIC18.18■□□□□ 0.5
NEK3P51956 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC18.18■□□□□ 0.5
NEK3P51956 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
NEK3P51956 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
NEK3P51956 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
NEK3P51956 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
NEK3P51956 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
NEK3P51956 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC18.18■□□□□ 0.5
NEK3P51956 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC18.18■□□□□ 0.5
NEK3P51956 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC18.18■□□□□ 0.5
NEK3P51956 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
NEK3P51956 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC18.17■□□□□ 0.5
NEK3P51956 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
NEK3P51956 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC18.17■□□□□ 0.5
NEK3P51956 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC18.17■□□□□ 0.5
NEK3P51956 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms