Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
PTPN9P43378 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
PTPN9P43378 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PTPN9P43378 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PTPN9P43378 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC18.32■□□□□ 0.52
PTPN9P43378 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC18.32■□□□□ 0.52
PTPN9P43378 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PTPN9P43378 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
PTPN9P43378 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PTPN9P43378 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC18.32■□□□□ 0.52
PTPN9P43378 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
PTPN9P43378 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC18.32■□□□□ 0.52
PTPN9P43378 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
PTPN9P43378 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC18.32■□□□□ 0.52
PTPN9P43378 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PTPN9P43378 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PTPN9P43378 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC18.31■□□□□ 0.52
PTPN9P43378 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
PTPN9P43378 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
PTPN9P43378 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
PTPN9P43378 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PTPN9P43378 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC18.31■□□□□ 0.52
PTPN9P43378 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
PTPN9P43378 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC18.31■□□□□ 0.52
PTPN9P43378 WAC-202ENST00000347934 2839 ntTSL 5 BASIC18.31■□□□□ 0.52
PTPN9P43378 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
PTPN9P43378 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC18.31■□□□□ 0.52
PTPN9P43378 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC18.31■□□□□ 0.52
PTPN9P43378 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC18.31■□□□□ 0.52
PTPN9P43378 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC18.31■□□□□ 0.52
PTPN9P43378 NUS1P1-201ENST00000446295 882 ntBASIC18.31■□□□□ 0.52
PTPN9P43378 TK1-204ENST00000590430 683 ntTSL 3 BASIC18.31■□□□□ 0.52
PTPN9P43378 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC18.31■□□□□ 0.52
PTPN9P43378 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PTPN9P43378 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PTPN9P43378 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
PTPN9P43378 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC18.31■□□□□ 0.52
PTPN9P43378 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
PTPN9P43378 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PTPN9P43378 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC18.31■□□□□ 0.52
PTPN9P43378 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
PTPN9P43378 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC18.31■□□□□ 0.52
PTPN9P43378 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
PTPN9P43378 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
PTPN9P43378 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC18.31■□□□□ 0.52
PTPN9P43378 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
PTPN9P43378 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
PTPN9P43378 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
PTPN9P43378 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC18.3■□□□□ 0.52
PTPN9P43378 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PTPN9P43378 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PTPN9P43378 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
PTPN9P43378 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
PTPN9P43378 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PTPN9P43378 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
PTPN9P43378 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC18.3■□□□□ 0.52
PTPN9P43378 FUT8-AS1-201ENST00000621019 1521 ntBASIC18.3■□□□□ 0.52
PTPN9P43378 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
PTPN9P43378 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
PTPN9P43378 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC18.3■□□□□ 0.52
PTPN9P43378 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC18.3■□□□□ 0.52
PTPN9P43378 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
PTPN9P43378 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC18.3■□□□□ 0.52
PTPN9P43378 NUS1P2-201ENST00000417358 873 ntBASIC18.3■□□□□ 0.52
PTPN9P43378 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC18.3■□□□□ 0.52
PTPN9P43378 KRT16P4-201ENST00000453883 522 ntBASIC18.3■□□□□ 0.52
PTPN9P43378 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
PTPN9P43378 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC18.3■□□□□ 0.52
PTPN9P43378 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC18.3■□□□□ 0.52
PTPN9P43378 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC18.3■□□□□ 0.52
PTPN9P43378 COX5A-204ENST00000567270 579 ntTSL 3 BASIC18.3■□□□□ 0.52
PTPN9P43378 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC18.3■□□□□ 0.52
PTPN9P43378 MIR3652-201ENST00000579335 131 ntBASIC18.3■□□□□ 0.52
PTPN9P43378 MIR5100-201ENST00000579544 119 ntBASIC18.3■□□□□ 0.52
PTPN9P43378 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC18.3■□□□□ 0.52
PTPN9P43378 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PTPN9P43378 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC18.3■□□□□ 0.52
PTPN9P43378 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PTPN9P43378 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC18.3■□□□□ 0.52
PTPN9P43378 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC18.3■□□□□ 0.52
PTPN9P43378 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC18.3■□□□□ 0.52
PTPN9P43378 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC18.3■□□□□ 0.52
PTPN9P43378 AC141586.5-201ENST00000624546 2050 ntBASIC18.3■□□□□ 0.52
PTPN9P43378 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
PTPN9P43378 AC016396.2-201ENST00000562575 1417 ntBASIC18.3■□□□□ 0.52
PTPN9P43378 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC18.3■□□□□ 0.52
PTPN9P43378 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PTPN9P43378 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
PTPN9P43378 AC139713.2-201ENST00000641328 2723 ntBASIC18.29■□□□□ 0.52
PTPN9P43378 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
PTPN9P43378 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC18.29■□□□□ 0.52
PTPN9P43378 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC18.29■□□□□ 0.52
PTPN9P43378 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PTPN9P43378 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
PTPN9P43378 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PTPN9P43378 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC18.29■□□□□ 0.52
PTPN9P43378 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
PTPN9P43378 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PTPN9P43378 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PTPN9P43378 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms