Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
SCN4AP35499 AC002558.1-201ENST00000488906 803 ntBASIC20.64■□□□□ 0.9
SCN4AP35499 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC20.64■□□□□ 0.9
SCN4AP35499 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.9
SCN4AP35499 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.9
SCN4AP35499 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SCN4AP35499 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC20.64■□□□□ 0.89
SCN4AP35499 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
SCN4AP35499 ARSEP1-201ENST00000420443 635 ntBASIC20.64■□□□□ 0.89
SCN4AP35499 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC20.64■□□□□ 0.89
SCN4AP35499 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC20.64■□□□□ 0.89
SCN4AP35499 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC20.64■□□□□ 0.89
SCN4AP35499 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
SCN4AP35499 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
SCN4AP35499 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
SCN4AP35499 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SCN4AP35499 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC20.63■□□□□ 0.89
SCN4AP35499 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC20.63■□□□□ 0.89
SCN4AP35499 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SCN4AP35499 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
SCN4AP35499 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
SCN4AP35499 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC20.63■□□□□ 0.89
SCN4AP35499 SPCS2P4-201ENST00000436160 681 ntBASIC20.63■□□□□ 0.89
SCN4AP35499 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC20.63■□□□□ 0.89
SCN4AP35499 GPR53P-205ENST00000457298 1084 ntBASIC20.63■□□□□ 0.89
SCN4AP35499 AL512638.1-201ENST00000457493 794 ntBASIC20.63■□□□□ 0.89
SCN4AP35499 DCTD-213ENST00000510370 794 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
SCN4AP35499 AL009183.1-201ENST00000603760 355 ntBASIC20.63■□□□□ 0.89
SCN4AP35499 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
SCN4AP35499 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SCN4AP35499 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC20.63■□□□□ 0.89
SCN4AP35499 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
SCN4AP35499 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SCN4AP35499 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
SCN4AP35499 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC20.63■□□□□ 0.89
SCN4AP35499 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SCN4AP35499 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
SCN4AP35499 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC20.63■□□□□ 0.89
SCN4AP35499 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
SCN4AP35499 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SCN4AP35499 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC20.62■□□□□ 0.89
SCN4AP35499 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC20.62■□□□□ 0.89
SCN4AP35499 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC20.62■□□□□ 0.89
SCN4AP35499 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
SCN4AP35499 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
SCN4AP35499 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SCN4AP35499 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SCN4AP35499 BID-204ENST00000399767 2129 ntTSL 2 BASIC20.62■□□□□ 0.89
SCN4AP35499 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SCN4AP35499 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC20.62■□□□□ 0.89
SCN4AP35499 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC20.62■□□□□ 0.89
SCN4AP35499 KRT17P7-201ENST00000451704 1104 ntBASIC20.62■□□□□ 0.89
SCN4AP35499 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC20.62■□□□□ 0.89
SCN4AP35499 CD7-202ENST00000578509 925 ntTSL 3 BASIC20.62■□□□□ 0.89
SCN4AP35499 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SCN4AP35499 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SCN4AP35499 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SCN4AP35499 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SCN4AP35499 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SCN4AP35499 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SCN4AP35499 AC022144.1-201ENST00000602255 1580 ntBASIC20.62■□□□□ 0.89
SCN4AP35499 AC007952.6-201ENST00000573168 2673 ntBASIC20.62■□□□□ 0.89
SCN4AP35499 AC003957.1-201ENST00000625108 2673 ntBASIC20.62■□□□□ 0.89
SCN4AP35499 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC20.62■□□□□ 0.89
SCN4AP35499 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC20.62■□□□□ 0.89
SCN4AP35499 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC20.62■□□□□ 0.89
SCN4AP35499 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
SCN4AP35499 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SCN4AP35499 ALG1L8P-201ENST00000533887 760 ntBASIC20.62■□□□□ 0.89
SCN4AP35499 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
SCN4AP35499 IGHV3-72-202ENST00000621503 303 ntBASIC20.62■□□□□ 0.89
SCN4AP35499 AL590560.3-201ENST00000623350 461 ntBASIC20.62■□□□□ 0.89
SCN4AP35499 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC20.62■□□□□ 0.89
SCN4AP35499 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
SCN4AP35499 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
SCN4AP35499 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SCN4AP35499 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
SCN4AP35499 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC20.61■□□□□ 0.89
SCN4AP35499 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC20.61■□□□□ 0.89
SCN4AP35499 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
SCN4AP35499 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
SCN4AP35499 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC20.61■□□□□ 0.89
SCN4AP35499 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC20.61■□□□□ 0.89
SCN4AP35499 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC20.61■□□□□ 0.89
SCN4AP35499 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SCN4AP35499 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
SCN4AP35499 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SCN4AP35499 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SCN4AP35499 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SCN4AP35499 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC20.61■□□□□ 0.89
SCN4AP35499 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SCN4AP35499 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC20.61■□□□□ 0.89
SCN4AP35499 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
SCN4AP35499 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC20.6■□□□□ 0.89
SCN4AP35499 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
SCN4AP35499 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SCN4AP35499 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
SCN4AP35499 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
SCN4AP35499 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SCN4AP35499 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms