Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
SDC1P18827 AC010460.3-201ENST00000511359 1579 ntBASIC16.81■□□□□ 0.28
SDC1P18827 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC16.81■□□□□ 0.28
SDC1P18827 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC16.81■□□□□ 0.28
SDC1P18827 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SDC1P18827 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SDC1P18827 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SDC1P18827 AC099398.1-201ENST00000567919 2776 ntBASIC16.81■□□□□ 0.28
SDC1P18827 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC16.81■□□□□ 0.28
SDC1P18827 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SDC1P18827 BAALC-202ENST00000306391 243 ntTSL 5 BASIC16.81■□□□□ 0.28
SDC1P18827 BAALC-204ENST00000330955 222 ntTSL 5 BASIC16.81■□□□□ 0.28
SDC1P18827 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
SDC1P18827 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC16.81■□□□□ 0.28
SDC1P18827 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC16.81■□□□□ 0.28
SDC1P18827 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC16.81■□□□□ 0.28
SDC1P18827 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC16.81■□□□□ 0.28
SDC1P18827 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SDC1P18827 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
SDC1P18827 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SDC1P18827 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
SDC1P18827 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SDC1P18827 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC16.81■□□□□ 0.28
SDC1P18827 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
SDC1P18827 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC16.81■□□□□ 0.28
SDC1P18827 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SDC1P18827 AL121761.2-201ENST00000598007 1648 ntBASIC16.81■□□□□ 0.28
SDC1P18827 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
SDC1P18827 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SDC1P18827 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
SDC1P18827 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
SDC1P18827 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
SDC1P18827 AC016396.2-201ENST00000562575 1417 ntBASIC16.8■□□□□ 0.28
SDC1P18827 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
SDC1P18827 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
SDC1P18827 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
SDC1P18827 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC16.8■□□□□ 0.28
SDC1P18827 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
SDC1P18827 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
SDC1P18827 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
SDC1P18827 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SDC1P18827 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
SDC1P18827 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
SDC1P18827 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC16.8■□□□□ 0.28
SDC1P18827 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
SDC1P18827 PC-208ENST00000529047 1607 ntTSL 3 BASIC16.8■□□□□ 0.28
SDC1P18827 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
SDC1P18827 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SDC1P18827 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC16.79■□□□□ 0.28
SDC1P18827 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
SDC1P18827 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SDC1P18827 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SDC1P18827 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SDC1P18827 AC097374.2-201ENST00000618617 1306 ntBASIC16.79■□□□□ 0.28
SDC1P18827 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC16.79■□□□□ 0.28
SDC1P18827 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC16.79■□□□□ 0.28
SDC1P18827 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
SDC1P18827 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SDC1P18827 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
SDC1P18827 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
SDC1P18827 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SDC1P18827 CNP-204ENST00000472031 1019 ntTSL 2 BASIC16.79■□□□□ 0.28
SDC1P18827 AC022616.7-201ENST00000525383 220 ntBASIC16.79■□□□□ 0.28
SDC1P18827 CLN6-204ENST00000564752 900 ntTSL 3 BASIC16.79■□□□□ 0.28
SDC1P18827 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC16.79■□□□□ 0.28
SDC1P18827 AL139327.4-201ENST00000612362 153 ntBASIC16.79■□□□□ 0.28
SDC1P18827 CLN6-214ENST00000636314 442 ntTSL 3 BASIC16.79■□□□□ 0.28
SDC1P18827 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC16.79■□□□□ 0.28
SDC1P18827 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SDC1P18827 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
SDC1P18827 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC16.79■□□□□ 0.28
SDC1P18827 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SDC1P18827 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
SDC1P18827 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
SDC1P18827 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SDC1P18827 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
SDC1P18827 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
SDC1P18827 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC16.78■□□□□ 0.28
SDC1P18827 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
SDC1P18827 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC16.78■□□□□ 0.28
SDC1P18827 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC16.78■□□□□ 0.28
SDC1P18827 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
SDC1P18827 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC16.78■□□□□ 0.28
SDC1P18827 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
SDC1P18827 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SDC1P18827 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
SDC1P18827 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC16.78■□□□□ 0.28
SDC1P18827 AL671277.2-201ENST00000458060 996 ntBASIC16.78■□□□□ 0.28
SDC1P18827 AC002558.1-201ENST00000488906 803 ntBASIC16.78■□□□□ 0.28
SDC1P18827 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC16.78■□□□□ 0.28
SDC1P18827 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC16.78■□□□□ 0.28
SDC1P18827 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC16.78■□□□□ 0.28
SDC1P18827 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC16.78■□□□□ 0.28
SDC1P18827 TBC1D3P5-201ENST00000579401 1545 ntBASIC16.78■□□□□ 0.28
SDC1P18827 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
SDC1P18827 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
SDC1P18827 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
SDC1P18827 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC16.78■□□□□ 0.28
SDC1P18827 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
SDC1P18827 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms