Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC17.22■□□□□ 0.35
SDC3O75056 MIR4751-201ENST00000578027 74 ntBASIC17.22■□□□□ 0.35
SDC3O75056 AP001160.2-201ENST00000596071 487 ntBASIC17.22■□□□□ 0.35
SDC3O75056 AL589182.2-201ENST00000619332 1049 ntBASIC17.22■□□□□ 0.35
SDC3O75056 AC134684.3-201ENST00000641758 218 ntBASIC17.22■□□□□ 0.35
SDC3O75056 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC17.22■□□□□ 0.35
SDC3O75056 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
SDC3O75056 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SDC3O75056 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SDC3O75056 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC17.22■□□□□ 0.35
SDC3O75056 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SDC3O75056 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SDC3O75056 AC135776.1-201ENST00000319817 2481 ntBASIC17.22■□□□□ 0.35
SDC3O75056 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SDC3O75056 FUT8-AS1-201ENST00000621019 1521 ntBASIC17.21■□□□□ 0.35
SDC3O75056 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC17.21■□□□□ 0.35
SDC3O75056 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC17.21■□□□□ 0.35
SDC3O75056 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
SDC3O75056 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SDC3O75056 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SDC3O75056 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SDC3O75056 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC17.21■□□□□ 0.35
SDC3O75056 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC17.21■□□□□ 0.35
SDC3O75056 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SDC3O75056 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC17.21■□□□□ 0.35
SDC3O75056 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC17.21■□□□□ 0.35
SDC3O75056 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SDC3O75056 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
SDC3O75056 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
SDC3O75056 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
SDC3O75056 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC17.21■□□□□ 0.35
SDC3O75056 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC17.21■□□□□ 0.35
SDC3O75056 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC17.21■□□□□ 0.35
SDC3O75056 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC17.21■□□□□ 0.35
SDC3O75056 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC17.21■□□□□ 0.35
SDC3O75056 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC17.21■□□□□ 0.35
SDC3O75056 AC004706.3-202ENST00000621574 984 ntBASIC17.21■□□□□ 0.35
SDC3O75056 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC17.21■□□□□ 0.35
SDC3O75056 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
SDC3O75056 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SDC3O75056 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SDC3O75056 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
SDC3O75056 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC17.21■□□□□ 0.35
SDC3O75056 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.34
SDC3O75056 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
SDC3O75056 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
SDC3O75056 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SDC3O75056 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SDC3O75056 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC17.2■□□□□ 0.34
SDC3O75056 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SDC3O75056 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SDC3O75056 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
SDC3O75056 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SDC3O75056 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SDC3O75056 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SDC3O75056 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SDC3O75056 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SDC3O75056 AC009949.1-201ENST00000623048 1830 ntBASIC17.2■□□□□ 0.34
SDC3O75056 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
SDC3O75056 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
SDC3O75056 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
SDC3O75056 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SDC3O75056 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
SDC3O75056 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SDC3O75056 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
SDC3O75056 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SDC3O75056 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC17.2■□□□□ 0.34
SDC3O75056 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SDC3O75056 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC17.2■□□□□ 0.34
SDC3O75056 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SDC3O75056 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SDC3O75056 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC17.2■□□□□ 0.34
SDC3O75056 AC109462.3-201ENST00000573934 613 ntBASIC17.2■□□□□ 0.34
SDC3O75056 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC17.2■□□□□ 0.34
SDC3O75056 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC17.2■□□□□ 0.34
SDC3O75056 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
SDC3O75056 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC17.2■□□□□ 0.34
SDC3O75056 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC17.2■□□□□ 0.34
SDC3O75056 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SDC3O75056 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC17.2■□□□□ 0.34
SDC3O75056 AC093677.2-201ENST00000600169 1863 ntBASIC17.2■□□□□ 0.34
SDC3O75056 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SDC3O75056 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SDC3O75056 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
SDC3O75056 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SDC3O75056 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SDC3O75056 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC17.2■□□□□ 0.34
SDC3O75056 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SDC3O75056 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SDC3O75056 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
SDC3O75056 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
SDC3O75056 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC17.19■□□□□ 0.34
SDC3O75056 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
SDC3O75056 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
SDC3O75056 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC17.19■□□□□ 0.34
SDC3O75056 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
SDC3O75056 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SDC3O75056 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
SDC3O75056 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
SDC3O75056 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 51.4 ms