Protein–RNA interactions for Protein: O60858

TRIM13, E3 ubiquitin-protein ligase TRIM13, humanhuman

Predictions only

Length 407 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM13O60858 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC17.39■□□□□ 0.37
TRIM13O60858 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
TRIM13O60858 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TRIM13O60858 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TRIM13O60858 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
TRIM13O60858 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TRIM13O60858 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC17.38■□□□□ 0.37
TRIM13O60858 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
TRIM13O60858 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
TRIM13O60858 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
TRIM13O60858 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
TRIM13O60858 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TRIM13O60858 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TRIM13O60858 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC17.38■□□□□ 0.37
TRIM13O60858 AC005104.2-201ENST00000427818 678 ntBASIC17.38■□□□□ 0.37
TRIM13O60858 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC17.38■□□□□ 0.37
TRIM13O60858 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC17.38■□□□□ 0.37
TRIM13O60858 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC17.38■□□□□ 0.37
TRIM13O60858 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
TRIM13O60858 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC17.38■□□□□ 0.37
TRIM13O60858 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
TRIM13O60858 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC17.38■□□□□ 0.37
TRIM13O60858 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC17.38■□□□□ 0.37
TRIM13O60858 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC17.38■□□□□ 0.37
TRIM13O60858 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
TRIM13O60858 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC17.38■□□□□ 0.37
TRIM13O60858 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
TRIM13O60858 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
TRIM13O60858 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
TRIM13O60858 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
TRIM13O60858 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
TRIM13O60858 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
TRIM13O60858 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
TRIM13O60858 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC17.38■□□□□ 0.37
TRIM13O60858 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TRIM13O60858 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
TRIM13O60858 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TRIM13O60858 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
TRIM13O60858 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC17.38■□□□□ 0.37
TRIM13O60858 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TRIM13O60858 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TRIM13O60858 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC17.37■□□□□ 0.37
TRIM13O60858 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
TRIM13O60858 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TRIM13O60858 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TRIM13O60858 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC17.37■□□□□ 0.37
TRIM13O60858 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TRIM13O60858 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TRIM13O60858 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
TRIM13O60858 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
TRIM13O60858 CRAT-202ENST00000393384 973 ntTSL 2 BASIC17.37■□□□□ 0.37
TRIM13O60858 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
TRIM13O60858 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
TRIM13O60858 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC17.37■□□□□ 0.37
TRIM13O60858 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC17.37■□□□□ 0.37
TRIM13O60858 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC17.37■□□□□ 0.37
TRIM13O60858 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC17.37■□□□□ 0.37
TRIM13O60858 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
TRIM13O60858 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC17.37■□□□□ 0.37
TRIM13O60858 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TRIM13O60858 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC17.37■□□□□ 0.37
TRIM13O60858 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
TRIM13O60858 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC17.37■□□□□ 0.37
TRIM13O60858 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
TRIM13O60858 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
TRIM13O60858 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
TRIM13O60858 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC17.37■□□□□ 0.37
TRIM13O60858 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
TRIM13O60858 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
TRIM13O60858 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TRIM13O60858 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
TRIM13O60858 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC17.37■□□□□ 0.37
TRIM13O60858 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
TRIM13O60858 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC17.36■□□□□ 0.37
TRIM13O60858 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC17.36■□□□□ 0.37
TRIM13O60858 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
TRIM13O60858 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC17.36■□□□□ 0.37
TRIM13O60858 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM13O60858 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC17.36■□□□□ 0.37
TRIM13O60858 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM13O60858 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM13O60858 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM13O60858 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
TRIM13O60858 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM13O60858 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM13O60858 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
TRIM13O60858 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM13O60858 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM13O60858 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC17.36■□□□□ 0.37
TRIM13O60858 ECEL1P3-201ENST00000427961 737 ntBASIC17.36■□□□□ 0.37
TRIM13O60858 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC17.36■□□□□ 0.37
TRIM13O60858 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM13O60858 AC034232.1-201ENST00000506026 1064 ntBASIC17.36■□□□□ 0.37
TRIM13O60858 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC17.36■□□□□ 0.37
TRIM13O60858 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC17.36■□□□□ 0.37
TRIM13O60858 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM13O60858 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM13O60858 AC009154.2-201ENST00000621177 724 ntBASIC17.36■□□□□ 0.37
TRIM13O60858 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM13O60858 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms