Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
PROM1O43490 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
PROM1O43490 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC16.77■□□□□ 0.28
PROM1O43490 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
PROM1O43490 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
PROM1O43490 VENTXP7-201ENST00000475503 772 ntBASIC16.77■□□□□ 0.28
PROM1O43490 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC16.77■□□□□ 0.28
PROM1O43490 AC091607.1-201ENST00000490318 1060 ntBASIC16.77■□□□□ 0.28
PROM1O43490 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
PROM1O43490 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
PROM1O43490 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC16.77■□□□□ 0.28
PROM1O43490 MIR3180-1-201ENST00000580374 94 ntBASIC16.77■□□□□ 0.28
PROM1O43490 MIR3180-3-201ENST00000584616 94 ntBASIC16.77■□□□□ 0.28
PROM1O43490 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC16.77■□□□□ 0.28
PROM1O43490 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
PROM1O43490 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC16.77■□□□□ 0.28
PROM1O43490 NPAP1P7-201ENST00000613027 823 ntBASIC16.77■□□□□ 0.28
PROM1O43490 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
PROM1O43490 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC16.77■□□□□ 0.28
PROM1O43490 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
PROM1O43490 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC16.77■□□□□ 0.28
PROM1O43490 FST-202ENST00000396947 2538 ntTSL 5 BASIC16.77■□□□□ 0.28
PROM1O43490 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC16.77■□□□□ 0.28
PROM1O43490 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC16.77■□□□□ 0.27
PROM1O43490 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
PROM1O43490 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.27
PROM1O43490 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
PROM1O43490 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC16.77■□□□□ 0.27
PROM1O43490 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.27
PROM1O43490 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
PROM1O43490 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC16.77■□□□□ 0.27
PROM1O43490 AC010460.3-201ENST00000511359 1579 ntBASIC16.77■□□□□ 0.27
PROM1O43490 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.27
PROM1O43490 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC16.77■□□□□ 0.27
PROM1O43490 AC233702.3-201ENST00000578656 1387 ntBASIC16.77■□□□□ 0.27
PROM1O43490 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PROM1O43490 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC16.76■□□□□ 0.27
PROM1O43490 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC16.76■□□□□ 0.27
PROM1O43490 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC16.76■□□□□ 0.27
PROM1O43490 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PROM1O43490 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PROM1O43490 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
PROM1O43490 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
PROM1O43490 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PROM1O43490 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PROM1O43490 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
PROM1O43490 ATP5G2P1-201ENST00000433580 426 ntBASIC16.76■□□□□ 0.27
PROM1O43490 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC16.76■□□□□ 0.27
PROM1O43490 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
PROM1O43490 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC16.76■□□□□ 0.27
PROM1O43490 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC16.76■□□□□ 0.27
PROM1O43490 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC16.76■□□□□ 0.27
PROM1O43490 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC16.76■□□□□ 0.27
PROM1O43490 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
PROM1O43490 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC16.76■□□□□ 0.27
PROM1O43490 AP005901.3-202ENST00000581653 237 ntBASIC16.76■□□□□ 0.27
PROM1O43490 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC16.76■□□□□ 0.27
PROM1O43490 IL11-204ENST00000590625 1028 ntTSL 2 BASIC16.76■□□□□ 0.27
PROM1O43490 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC16.76■□□□□ 0.27
PROM1O43490 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PROM1O43490 LINC01451-201ENST00000623792 534 ntBASIC16.76■□□□□ 0.27
PROM1O43490 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC16.76■□□□□ 0.27
PROM1O43490 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC16.76■□□□□ 0.27
PROM1O43490 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PROM1O43490 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC16.76■□□□□ 0.27
PROM1O43490 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC16.76■□□□□ 0.27
PROM1O43490 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
PROM1O43490 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
PROM1O43490 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC16.76■□□□□ 0.27
PROM1O43490 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC16.76■□□□□ 0.27
PROM1O43490 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
PROM1O43490 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC16.76■□□□□ 0.27
PROM1O43490 LINC00304-203ENST00000565008 1864 ntBASIC16.76■□□□□ 0.27
PROM1O43490 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
PROM1O43490 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC16.75■□□□□ 0.27
PROM1O43490 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PROM1O43490 AC133963.1-201ENST00000504166 1679 ntBASIC16.75■□□□□ 0.27
PROM1O43490 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
PROM1O43490 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC16.75■□□□□ 0.27
PROM1O43490 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC16.75■□□□□ 0.27
PROM1O43490 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC16.75■□□□□ 0.27
PROM1O43490 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
PROM1O43490 COX5BP2-201ENST00000392354 334 ntBASIC16.75■□□□□ 0.27
PROM1O43490 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC16.75■□□□□ 0.27
PROM1O43490 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC16.75■□□□□ 0.27
PROM1O43490 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC16.75■□□□□ 0.27
PROM1O43490 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC16.75■□□□□ 0.27
PROM1O43490 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
PROM1O43490 ABR-204ENST00000543210 1049 ntTSL 2 BASIC16.75■□□□□ 0.27
PROM1O43490 CIB2-208ENST00000560618 804 ntTSL 2 BASIC16.75■□□□□ 0.27
PROM1O43490 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC16.75■□□□□ 0.27
PROM1O43490 ABR-217ENST00000572441 563 ntTSL 4 BASIC16.75■□□□□ 0.27
PROM1O43490 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
PROM1O43490 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC16.75■□□□□ 0.27
PROM1O43490 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC16.75■□□□□ 0.27
PROM1O43490 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
PROM1O43490 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC16.75■□□□□ 0.27
PROM1O43490 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
PROM1O43490 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
PROM1O43490 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC16.75■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 59.7 ms