Protein–RNA interactions for Protein: O14562

UBFD1, Ubiquitin domain-containing protein UBFD1, humanhuman

Known RBP Predictions only

Length 309 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBFD1O14562 AC096633.1-201ENST00000422446 749 ntBASIC17.12■□□□□ 0.33
UBFD1O14562 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC17.12■□□□□ 0.33
UBFD1O14562 ZNF444P1-201ENST00000559497 298 ntBASIC17.12■□□□□ 0.33
UBFD1O14562 NAA38-203ENST00000575071 553 ntTSL 2 BASIC17.12■□□□□ 0.33
UBFD1O14562 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
UBFD1O14562 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
UBFD1O14562 GPR32P1-201ENST00000601788 811 ntBASIC17.12■□□□□ 0.33
UBFD1O14562 SPEG-225ENST00000617028 815 ntTSL 5 BASIC17.12■□□□□ 0.33
UBFD1O14562 HYMAI.1-201ENST00000620949 238 ntBASIC17.12■□□□□ 0.33
UBFD1O14562 DFFB-212ENST00000625756 649 ntTSL 5 BASIC17.12■□□□□ 0.33
UBFD1O14562 AC133561.5-201ENST00000635547 218 ntBASIC17.12■□□□□ 0.33
UBFD1O14562 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC17.12■□□□□ 0.33
UBFD1O14562 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
UBFD1O14562 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
UBFD1O14562 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
UBFD1O14562 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
UBFD1O14562 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
UBFD1O14562 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
UBFD1O14562 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
UBFD1O14562 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
UBFD1O14562 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC17.12■□□□□ 0.33
UBFD1O14562 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC17.12■□□□□ 0.33
UBFD1O14562 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
UBFD1O14562 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC17.12■□□□□ 0.33
UBFD1O14562 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
UBFD1O14562 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
UBFD1O14562 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
UBFD1O14562 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC17.11■□□□□ 0.33
UBFD1O14562 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC17.11■□□□□ 0.33
UBFD1O14562 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
UBFD1O14562 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
UBFD1O14562 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
UBFD1O14562 AC010460.3-201ENST00000511359 1579 ntBASIC17.11■□□□□ 0.33
UBFD1O14562 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
UBFD1O14562 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
UBFD1O14562 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC17.11■□□□□ 0.33
UBFD1O14562 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC17.11■□□□□ 0.33
UBFD1O14562 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
UBFD1O14562 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
UBFD1O14562 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
UBFD1O14562 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
UBFD1O14562 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC17.11■□□□□ 0.33
UBFD1O14562 AL137013.1-201ENST00000432946 1228 ntBASIC17.11■□□□□ 0.33
UBFD1O14562 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC17.11■□□□□ 0.33
UBFD1O14562 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC17.11■□□□□ 0.33
UBFD1O14562 VENTXP5-201ENST00000523979 775 ntBASIC17.11■□□□□ 0.33
UBFD1O14562 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC17.11■□□□□ 0.33
UBFD1O14562 TMED1-207ENST00000591695 809 ntTSL 5 BASIC17.11■□□□□ 0.33
UBFD1O14562 AL139327.4-201ENST00000612362 153 ntBASIC17.11■□□□□ 0.33
UBFD1O14562 AC005363.2-201ENST00000618631 242 ntBASIC17.11■□□□□ 0.33
UBFD1O14562 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC17.11■□□□□ 0.33
UBFD1O14562 AC046185.3-201ENST00000623228 1824 ntBASIC17.11■□□□□ 0.33
UBFD1O14562 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC17.11■□□□□ 0.33
UBFD1O14562 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
UBFD1O14562 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC17.11■□□□□ 0.33
UBFD1O14562 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
UBFD1O14562 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC17.11■□□□□ 0.33
UBFD1O14562 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
UBFD1O14562 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
UBFD1O14562 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC17.11■□□□□ 0.33
UBFD1O14562 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
UBFD1O14562 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
UBFD1O14562 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
UBFD1O14562 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
UBFD1O14562 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
UBFD1O14562 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
UBFD1O14562 TNRC18P3-201ENST00000441896 2691 ntBASIC17.1■□□□□ 0.33
UBFD1O14562 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
UBFD1O14562 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
UBFD1O14562 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC17.1■□□□□ 0.33
UBFD1O14562 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
UBFD1O14562 SLC25A1P3-201ENST00000395415 828 ntBASIC17.1■□□□□ 0.33
UBFD1O14562 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
UBFD1O14562 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
UBFD1O14562 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC17.1■□□□□ 0.33
UBFD1O14562 RNF126P1-202ENST00000569893 925 ntBASIC17.1■□□□□ 0.33
UBFD1O14562 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC17.1■□□□□ 0.33
UBFD1O14562 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC17.1■□□□□ 0.33
UBFD1O14562 AC005332.3-201ENST00000589904 676 ntBASIC17.1■□□□□ 0.33
UBFD1O14562 AL390719.2-201ENST00000606993 987 ntBASIC17.1■□□□□ 0.33
UBFD1O14562 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
UBFD1O14562 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
UBFD1O14562 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC17.1■□□□□ 0.33
UBFD1O14562 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
UBFD1O14562 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
UBFD1O14562 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
UBFD1O14562 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
UBFD1O14562 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
UBFD1O14562 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
UBFD1O14562 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
UBFD1O14562 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
UBFD1O14562 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC17.1■□□□□ 0.33
UBFD1O14562 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
UBFD1O14562 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
UBFD1O14562 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
UBFD1O14562 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
UBFD1O14562 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC17.1■□□□□ 0.33
UBFD1O14562 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
UBFD1O14562 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC17.1■□□□□ 0.33
UBFD1O14562 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms