Protein–RNA interactions for Protein: Q9Y5X1

SNX9, Sorting nexin-9, humanhuman

Predictions only

Length 595 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX9Q9Y5X1 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC18.91■□□□□ 0.62
SNX9Q9Y5X1 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC18.91■□□□□ 0.62
SNX9Q9Y5X1 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SNX9Q9Y5X1 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SNX9Q9Y5X1 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SNX9Q9Y5X1 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC18.91■□□□□ 0.62
SNX9Q9Y5X1 RBM17P3-201ENST00000417687 1192 ntBASIC18.91■□□□□ 0.62
SNX9Q9Y5X1 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SNX9Q9Y5X1 SRP19-202ENST00000445150 833 ntTSL 2 BASIC18.91■□□□□ 0.62
SNX9Q9Y5X1 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC18.91■□□□□ 0.62
SNX9Q9Y5X1 AC104692.2-201ENST00000603054 253 ntBASIC18.91■□□□□ 0.62
SNX9Q9Y5X1 AL355877.3-201ENST00000622820 899 ntBASIC18.91■□□□□ 0.62
SNX9Q9Y5X1 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
SNX9Q9Y5X1 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
SNX9Q9Y5X1 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC18.91■□□□□ 0.62
SNX9Q9Y5X1 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SNX9Q9Y5X1 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SNX9Q9Y5X1 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SNX9Q9Y5X1 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
SNX9Q9Y5X1 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SNX9Q9Y5X1 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
SNX9Q9Y5X1 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC18.9■□□□□ 0.62
SNX9Q9Y5X1 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC18.9■□□□□ 0.62
SNX9Q9Y5X1 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
SNX9Q9Y5X1 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
SNX9Q9Y5X1 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
SNX9Q9Y5X1 SOD2-201ENST00000337404 991 ntTSL 2 BASIC18.9■□□□□ 0.62
SNX9Q9Y5X1 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
SNX9Q9Y5X1 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SNX9Q9Y5X1 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SNX9Q9Y5X1 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SNX9Q9Y5X1 NME9-203ENST00000383180 2133 ntTSL 2 BASIC18.9■□□□□ 0.62
SNX9Q9Y5X1 AC026396.1-201ENST00000419388 421 ntBASIC18.9■□□□□ 0.62
SNX9Q9Y5X1 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC18.9■□□□□ 0.62
SNX9Q9Y5X1 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC18.9■□□□□ 0.62
SNX9Q9Y5X1 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
SNX9Q9Y5X1 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SNX9Q9Y5X1 AD001527.2-201ENST00000622994 785 ntBASIC18.9■□□□□ 0.62
SNX9Q9Y5X1 AP000867.4-201ENST00000641616 219 ntBASIC18.9■□□□□ 0.62
SNX9Q9Y5X1 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
SNX9Q9Y5X1 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC18.9■□□□□ 0.62
SNX9Q9Y5X1 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC18.9■□□□□ 0.62
SNX9Q9Y5X1 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SNX9Q9Y5X1 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SNX9Q9Y5X1 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC18.9■□□□□ 0.62
SNX9Q9Y5X1 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC18.9■□□□□ 0.62
SNX9Q9Y5X1 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SNX9Q9Y5X1 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC18.9■□□□□ 0.62
SNX9Q9Y5X1 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
SNX9Q9Y5X1 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC18.9■□□□□ 0.62
SNX9Q9Y5X1 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SNX9Q9Y5X1 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SNX9Q9Y5X1 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC18.9■□□□□ 0.62
SNX9Q9Y5X1 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC18.89■□□□□ 0.62
SNX9Q9Y5X1 AL049757.1-201ENST00000616842 1596 ntBASIC18.89■□□□□ 0.62
SNX9Q9Y5X1 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC18.89■□□□□ 0.62
SNX9Q9Y5X1 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.62
SNX9Q9Y5X1 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SNX9Q9Y5X1 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC18.89■□□□□ 0.61
SNX9Q9Y5X1 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
SNX9Q9Y5X1 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SNX9Q9Y5X1 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SNX9Q9Y5X1 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SNX9Q9Y5X1 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SNX9Q9Y5X1 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC18.89■□□□□ 0.61
SNX9Q9Y5X1 SLC25A6P5-201ENST00000435663 894 ntBASIC18.89■□□□□ 0.61
SNX9Q9Y5X1 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC18.89■□□□□ 0.61
SNX9Q9Y5X1 FGFR3P6-201ENST00000457012 610 ntBASIC18.89■□□□□ 0.61
SNX9Q9Y5X1 AL160237.2-201ENST00000556165 472 ntBASIC18.89■□□□□ 0.61
SNX9Q9Y5X1 IRF8-202ENST00000562492 946 ntTSL 3 BASIC18.89■□□□□ 0.61
SNX9Q9Y5X1 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC18.89■□□□□ 0.61
SNX9Q9Y5X1 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC18.89■□□□□ 0.61
SNX9Q9Y5X1 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC18.89■□□□□ 0.61
SNX9Q9Y5X1 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
SNX9Q9Y5X1 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
SNX9Q9Y5X1 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
SNX9Q9Y5X1 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
SNX9Q9Y5X1 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
SNX9Q9Y5X1 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
SNX9Q9Y5X1 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SNX9Q9Y5X1 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC18.89■□□□□ 0.61
SNX9Q9Y5X1 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC18.89■□□□□ 0.61
SNX9Q9Y5X1 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SNX9Q9Y5X1 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
SNX9Q9Y5X1 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC18.89■□□□□ 0.61
SNX9Q9Y5X1 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
SNX9Q9Y5X1 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
SNX9Q9Y5X1 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
SNX9Q9Y5X1 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC18.89■□□□□ 0.61
SNX9Q9Y5X1 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SNX9Q9Y5X1 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
SNX9Q9Y5X1 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
SNX9Q9Y5X1 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC18.88■□□□□ 0.61
SNX9Q9Y5X1 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SNX9Q9Y5X1 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SNX9Q9Y5X1 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SNX9Q9Y5X1 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC18.88■□□□□ 0.61
SNX9Q9Y5X1 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SNX9Q9Y5X1 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SNX9Q9Y5X1 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 45.6 ms