Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 AL512638.1-201ENST00000457493 794 ntBASIC26.49■■□□□ 1.83
COL17A1Q9UMD9 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
COL17A1Q9UMD9 AC009118.2-201ENST00000613275 655 ntBASIC26.49■■□□□ 1.83
COL17A1Q9UMD9 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
COL17A1Q9UMD9 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC26.49■■□□□ 1.83
COL17A1Q9UMD9 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
COL17A1Q9UMD9 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC26.49■■□□□ 1.83
COL17A1Q9UMD9 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
COL17A1Q9UMD9 AC018445.3-201ENST00000624177 1945 ntBASIC26.49■■□□□ 1.83
COL17A1Q9UMD9 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
COL17A1Q9UMD9 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
COL17A1Q9UMD9 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
COL17A1Q9UMD9 AC005332.7-201ENST00000614046 2005 ntBASIC26.49■■□□□ 1.83
COL17A1Q9UMD9 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC26.49■■□□□ 1.83
COL17A1Q9UMD9 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC26.49■■□□□ 1.83
COL17A1Q9UMD9 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
COL17A1Q9UMD9 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC26.49■■□□□ 1.83
COL17A1Q9UMD9 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC26.49■■□□□ 1.83
COL17A1Q9UMD9 SNCG-201ENST00000348795 684 ntTSL 2 BASIC26.49■■□□□ 1.83
COL17A1Q9UMD9 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC26.49■■□□□ 1.83
COL17A1Q9UMD9 STK25P1-201ENST00000585406 838 ntBASIC26.49■■□□□ 1.83
COL17A1Q9UMD9 SSH2-211ENST00000590153 570 ntTSL 4 BASIC26.49■■□□□ 1.83
COL17A1Q9UMD9 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC26.49■■□□□ 1.83
COL17A1Q9UMD9 AC116562.4-201ENST00000641316 2276 ntBASIC26.48■■□□□ 1.83
COL17A1Q9UMD9 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC26.48■■□□□ 1.83
COL17A1Q9UMD9 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
COL17A1Q9UMD9 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC26.48■■□□□ 1.83
COL17A1Q9UMD9 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
COL17A1Q9UMD9 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC26.48■■□□□ 1.83
COL17A1Q9UMD9 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC26.48■■□□□ 1.83
COL17A1Q9UMD9 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC26.48■■□□□ 1.83
COL17A1Q9UMD9 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC26.48■■□□□ 1.83
COL17A1Q9UMD9 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC26.48■■□□□ 1.83
COL17A1Q9UMD9 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC26.48■■□□□ 1.83
COL17A1Q9UMD9 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC26.47■■□□□ 1.83
COL17A1Q9UMD9 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC26.47■■□□□ 1.83
COL17A1Q9UMD9 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
COL17A1Q9UMD9 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
COL17A1Q9UMD9 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
COL17A1Q9UMD9 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC26.47■■□□□ 1.83
COL17A1Q9UMD9 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC26.47■■□□□ 1.83
COL17A1Q9UMD9 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
COL17A1Q9UMD9 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC26.47■■□□□ 1.83
COL17A1Q9UMD9 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC26.47■■□□□ 1.83
COL17A1Q9UMD9 GATD1-206ENST00000526325 756 ntTSL 5 BASIC26.47■■□□□ 1.83
COL17A1Q9UMD9 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC26.47■■□□□ 1.83
COL17A1Q9UMD9 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC26.47■■□□□ 1.83
COL17A1Q9UMD9 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC26.47■■□□□ 1.83
COL17A1Q9UMD9 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC26.47■■□□□ 1.83
COL17A1Q9UMD9 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC26.47■■□□□ 1.83
COL17A1Q9UMD9 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC26.47■■□□□ 1.83
COL17A1Q9UMD9 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
COL17A1Q9UMD9 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC26.46■■□□□ 1.83
COL17A1Q9UMD9 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
COL17A1Q9UMD9 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
COL17A1Q9UMD9 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC26.46■■□□□ 1.83
COL17A1Q9UMD9 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC26.46■■□□□ 1.83
COL17A1Q9UMD9 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC26.46■■□□□ 1.83
COL17A1Q9UMD9 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC26.46■■□□□ 1.83
COL17A1Q9UMD9 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
COL17A1Q9UMD9 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC26.46■■□□□ 1.83
COL17A1Q9UMD9 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC26.46■■□□□ 1.83
COL17A1Q9UMD9 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC26.46■■□□□ 1.83
COL17A1Q9UMD9 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC26.46■■□□□ 1.83
COL17A1Q9UMD9 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
COL17A1Q9UMD9 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC26.46■■□□□ 1.83
COL17A1Q9UMD9 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
COL17A1Q9UMD9 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC26.46■■□□□ 1.83
COL17A1Q9UMD9 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
COL17A1Q9UMD9 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
COL17A1Q9UMD9 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC26.45■■□□□ 1.82
COL17A1Q9UMD9 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC26.45■■□□□ 1.82
COL17A1Q9UMD9 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
COL17A1Q9UMD9 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC26.45■■□□□ 1.82
COL17A1Q9UMD9 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC26.45■■□□□ 1.82
COL17A1Q9UMD9 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC26.45■■□□□ 1.82
COL17A1Q9UMD9 AL590787.1-201ENST00000568856 1315 ntBASIC26.45■■□□□ 1.82
COL17A1Q9UMD9 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC26.45■■□□□ 1.82
COL17A1Q9UMD9 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC26.45■■□□□ 1.82
COL17A1Q9UMD9 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC26.45■■□□□ 1.82
COL17A1Q9UMD9 AC005082.1-201ENST00000413042 2259 ntBASIC26.45■■□□□ 1.82
COL17A1Q9UMD9 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC26.45■■□□□ 1.82
COL17A1Q9UMD9 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC26.44■■□□□ 1.82
COL17A1Q9UMD9 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC26.44■■□□□ 1.82
COL17A1Q9UMD9 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC26.44■■□□□ 1.82
COL17A1Q9UMD9 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
COL17A1Q9UMD9 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC26.44■■□□□ 1.82
COL17A1Q9UMD9 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
COL17A1Q9UMD9 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
COL17A1Q9UMD9 AC241585.1-201ENST00000433527 519 ntBASIC26.44■■□□□ 1.82
COL17A1Q9UMD9 RARRES2P8-201ENST00000566335 367 ntBASIC26.44■■□□□ 1.82
COL17A1Q9UMD9 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
COL17A1Q9UMD9 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC26.44■■□□□ 1.82
COL17A1Q9UMD9 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC26.44■■□□□ 1.82
COL17A1Q9UMD9 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC26.44■■□□□ 1.82
COL17A1Q9UMD9 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
COL17A1Q9UMD9 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC26.44■■□□□ 1.82
COL17A1Q9UMD9 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC26.44■■□□□ 1.82
COL17A1Q9UMD9 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
COL17A1Q9UMD9 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms