Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC17.54■□□□□ 0.4
TRIM39Q9HCM9 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC17.54■□□□□ 0.4
TRIM39Q9HCM9 IRF5-214ENST00000613821 595 ntTSL 5 BASIC17.54■□□□□ 0.4
TRIM39Q9HCM9 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
TRIM39Q9HCM9 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC17.54■□□□□ 0.4
TRIM39Q9HCM9 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TRIM39Q9HCM9 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC17.54■□□□□ 0.4
TRIM39Q9HCM9 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC17.54■□□□□ 0.4
TRIM39Q9HCM9 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TRIM39Q9HCM9 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC17.54■□□□□ 0.4
TRIM39Q9HCM9 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TRIM39Q9HCM9 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TRIM39Q9HCM9 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TRIM39Q9HCM9 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
TRIM39Q9HCM9 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC17.53■□□□□ 0.4
TRIM39Q9HCM9 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
TRIM39Q9HCM9 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TRIM39Q9HCM9 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TRIM39Q9HCM9 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC17.53■□□□□ 0.4
TRIM39Q9HCM9 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TRIM39Q9HCM9 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC17.53■□□□□ 0.4
TRIM39Q9HCM9 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
TRIM39Q9HCM9 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
TRIM39Q9HCM9 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC17.53■□□□□ 0.4
TRIM39Q9HCM9 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TRIM39Q9HCM9 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
TRIM39Q9HCM9 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC17.53■□□□□ 0.4
TRIM39Q9HCM9 CTNS-203ENST00000399306 803 ntTSL 3 BASIC17.53■□□□□ 0.4
TRIM39Q9HCM9 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC17.53■□□□□ 0.4
TRIM39Q9HCM9 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
TRIM39Q9HCM9 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC17.53■□□□□ 0.4
TRIM39Q9HCM9 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC17.53■□□□□ 0.4
TRIM39Q9HCM9 AC122714.2-201ENST00000502787 707 ntBASIC17.53■□□□□ 0.4
TRIM39Q9HCM9 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
TRIM39Q9HCM9 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TRIM39Q9HCM9 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC17.53■□□□□ 0.4
TRIM39Q9HCM9 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC17.53■□□□□ 0.4
TRIM39Q9HCM9 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC17.53■□□□□ 0.4
TRIM39Q9HCM9 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC17.53■□□□□ 0.4
TRIM39Q9HCM9 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC17.53■□□□□ 0.4
TRIM39Q9HCM9 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
TRIM39Q9HCM9 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
TRIM39Q9HCM9 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
TRIM39Q9HCM9 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC17.53■□□□□ 0.4
TRIM39Q9HCM9 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
TRIM39Q9HCM9 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
TRIM39Q9HCM9 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC17.52■□□□□ 0.4
TRIM39Q9HCM9 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC17.52■□□□□ 0.4
TRIM39Q9HCM9 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
TRIM39Q9HCM9 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
TRIM39Q9HCM9 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
TRIM39Q9HCM9 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
TRIM39Q9HCM9 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
TRIM39Q9HCM9 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
TRIM39Q9HCM9 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
TRIM39Q9HCM9 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
TRIM39Q9HCM9 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
TRIM39Q9HCM9 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
TRIM39Q9HCM9 EMD-201ENST00000369835 966 ntTSL 3 BASIC17.52■□□□□ 0.4
TRIM39Q9HCM9 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
TRIM39Q9HCM9 LSM5-204ENST00000409909 740 ntTSL 2 BASIC17.52■□□□□ 0.4
TRIM39Q9HCM9 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC17.52■□□□□ 0.4
TRIM39Q9HCM9 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC17.52■□□□□ 0.4
TRIM39Q9HCM9 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC17.52■□□□□ 0.4
TRIM39Q9HCM9 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
TRIM39Q9HCM9 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC17.52■□□□□ 0.4
TRIM39Q9HCM9 RN7SL510P-201ENST00000581311 263 ntBASIC17.52■□□□□ 0.4
TRIM39Q9HCM9 GZMM-202ENST00000592501 941 ntTSL 3 BASIC17.52■□□□□ 0.4
TRIM39Q9HCM9 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC17.52■□□□□ 0.4
TRIM39Q9HCM9 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC17.52■□□□□ 0.4
TRIM39Q9HCM9 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC17.52■□□□□ 0.4
TRIM39Q9HCM9 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
TRIM39Q9HCM9 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC17.52■□□□□ 0.39
TRIM39Q9HCM9 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC17.52■□□□□ 0.39
TRIM39Q9HCM9 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
TRIM39Q9HCM9 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.39
TRIM39Q9HCM9 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.39
TRIM39Q9HCM9 BX276092.7-203ENST00000637198 1536 ntBASIC17.52■□□□□ 0.39
TRIM39Q9HCM9 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
TRIM39Q9HCM9 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.39
TRIM39Q9HCM9 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRIM39Q9HCM9 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
TRIM39Q9HCM9 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRIM39Q9HCM9 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRIM39Q9HCM9 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC17.51■□□□□ 0.39
TRIM39Q9HCM9 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRIM39Q9HCM9 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRIM39Q9HCM9 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TRIM39Q9HCM9 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRIM39Q9HCM9 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRIM39Q9HCM9 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRIM39Q9HCM9 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC17.51■□□□□ 0.39
TRIM39Q9HCM9 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRIM39Q9HCM9 ADM-208ENST00000534464 1640 ntTSL 2 BASIC17.51■□□□□ 0.39
TRIM39Q9HCM9 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRIM39Q9HCM9 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC17.51■□□□□ 0.39
TRIM39Q9HCM9 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRIM39Q9HCM9 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
TRIM39Q9HCM9 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRIM39Q9HCM9 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 44 ms