Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
ZNF541Q9H0D2 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC21■□□□□ 0.95
ZNF541Q9H0D2 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
ZNF541Q9H0D2 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
ZNF541Q9H0D2 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC21■□□□□ 0.95
ZNF541Q9H0D2 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC21■□□□□ 0.95
ZNF541Q9H0D2 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC21■□□□□ 0.95
ZNF541Q9H0D2 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC21■□□□□ 0.95
ZNF541Q9H0D2 AL512356.2-201ENST00000546955 174 ntBASIC21■□□□□ 0.95
ZNF541Q9H0D2 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC21■□□□□ 0.95
ZNF541Q9H0D2 LINC02560-201ENST00000596379 459 ntBASIC21■□□□□ 0.95
ZNF541Q9H0D2 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC21■□□□□ 0.95
ZNF541Q9H0D2 HFE2-206ENST00000634927 506 ntTSL 4 BASIC21■□□□□ 0.95
ZNF541Q9H0D2 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
ZNF541Q9H0D2 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC21■□□□□ 0.95
ZNF541Q9H0D2 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
ZNF541Q9H0D2 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC21■□□□□ 0.95
ZNF541Q9H0D2 FO538757.1-201ENST00000623083 1397 ntBASIC21■□□□□ 0.95
ZNF541Q9H0D2 CYP51A1P2-201ENST00000419457 1499 ntBASIC20.99■□□□□ 0.95
ZNF541Q9H0D2 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC20.99■□□□□ 0.95
ZNF541Q9H0D2 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
ZNF541Q9H0D2 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
ZNF541Q9H0D2 HARS-201ENST00000307633 1780 ntTSL 2 BASIC20.99■□□□□ 0.95
ZNF541Q9H0D2 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC20.99■□□□□ 0.95
ZNF541Q9H0D2 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
ZNF541Q9H0D2 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
ZNF541Q9H0D2 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
ZNF541Q9H0D2 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
ZNF541Q9H0D2 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
ZNF541Q9H0D2 WRB-204ENST00000398753 699 ntTSL 3 BASIC20.99■□□□□ 0.95
ZNF541Q9H0D2 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC20.99■□□□□ 0.95
ZNF541Q9H0D2 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC20.99■□□□□ 0.95
ZNF541Q9H0D2 HNRNPA1P40-201ENST00000426371 1278 ntBASIC20.99■□□□□ 0.95
ZNF541Q9H0D2 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC20.99■□□□□ 0.95
ZNF541Q9H0D2 AP001059.3-201ENST00000619053 235 ntBASIC20.99■□□□□ 0.95
ZNF541Q9H0D2 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
ZNF541Q9H0D2 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC20.99■□□□□ 0.95
ZNF541Q9H0D2 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
ZNF541Q9H0D2 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
ZNF541Q9H0D2 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
ZNF541Q9H0D2 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
ZNF541Q9H0D2 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
ZNF541Q9H0D2 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC20.98■□□□□ 0.95
ZNF541Q9H0D2 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
ZNF541Q9H0D2 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
ZNF541Q9H0D2 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
ZNF541Q9H0D2 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
ZNF541Q9H0D2 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
ZNF541Q9H0D2 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC20.98■□□□□ 0.95
ZNF541Q9H0D2 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC20.98■□□□□ 0.95
ZNF541Q9H0D2 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
ZNF541Q9H0D2 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
ZNF541Q9H0D2 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
ZNF541Q9H0D2 TREML5P-201ENST00000421694 576 ntBASIC20.98■□□□□ 0.95
ZNF541Q9H0D2 AC107890.1-201ENST00000422478 521 ntBASIC20.98■□□□□ 0.95
ZNF541Q9H0D2 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC20.98■□□□□ 0.95
ZNF541Q9H0D2 AC125807.1-201ENST00000483097 614 ntBASIC20.98■□□□□ 0.95
ZNF541Q9H0D2 IGHV3-52-201ENST00000519770 353 ntBASIC20.98■□□□□ 0.95
ZNF541Q9H0D2 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC20.98■□□□□ 0.95
ZNF541Q9H0D2 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC20.98■□□□□ 0.95
ZNF541Q9H0D2 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC20.98■□□□□ 0.95
ZNF541Q9H0D2 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC20.98■□□□□ 0.95
ZNF541Q9H0D2 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC20.98■□□□□ 0.95
ZNF541Q9H0D2 AL390754.1-201ENST00000619088 582 ntBASIC20.98■□□□□ 0.95
ZNF541Q9H0D2 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
ZNF541Q9H0D2 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
ZNF541Q9H0D2 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
ZNF541Q9H0D2 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
ZNF541Q9H0D2 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
ZNF541Q9H0D2 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
ZNF541Q9H0D2 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
ZNF541Q9H0D2 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
ZNF541Q9H0D2 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
ZNF541Q9H0D2 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
ZNF541Q9H0D2 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC20.97■□□□□ 0.95
ZNF541Q9H0D2 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC20.97■□□□□ 0.95
ZNF541Q9H0D2 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC20.97■□□□□ 0.95
ZNF541Q9H0D2 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC20.97■□□□□ 0.95
ZNF541Q9H0D2 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
ZNF541Q9H0D2 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC20.97■□□□□ 0.95
ZNF541Q9H0D2 FAM207CP-201ENST00000443486 507 ntBASIC20.97■□□□□ 0.95
ZNF541Q9H0D2 SLC25A39P2-201ENST00000537614 270 ntBASIC20.97■□□□□ 0.95
ZNF541Q9H0D2 TSFM-210ENST00000550559 897 ntTSL 5 BASIC20.97■□□□□ 0.95
ZNF541Q9H0D2 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC20.97■□□□□ 0.95
ZNF541Q9H0D2 AL008721.1-201ENST00000609964 604 ntBASIC20.97■□□□□ 0.95
ZNF541Q9H0D2 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
ZNF541Q9H0D2 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
ZNF541Q9H0D2 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
ZNF541Q9H0D2 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
ZNF541Q9H0D2 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
ZNF541Q9H0D2 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
ZNF541Q9H0D2 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
ZNF541Q9H0D2 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
ZNF541Q9H0D2 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC20.96■□□□□ 0.95
ZNF541Q9H0D2 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
ZNF541Q9H0D2 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
ZNF541Q9H0D2 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
ZNF541Q9H0D2 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC20.96■□□□□ 0.95
ZNF541Q9H0D2 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC20.96■□□□□ 0.95
ZNF541Q9H0D2 SLC25A6P2-201ENST00000497974 877 ntBASIC20.96■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms