Protein–RNA interactions for Protein: Q9BY42

RTFDC1, Protein RTF2 homolog, humanhuman

Predicted RBP Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTFDC1Q9BY42 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC21.33■■□□□ 1
RTFDC1Q9BY42 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1
RTFDC1Q9BY42 AC135776.1-201ENST00000319817 2481 ntBASIC21.33■■□□□ 1
RTFDC1Q9BY42 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC21.33■■□□□ 1
RTFDC1Q9BY42 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC21.33■■□□□ 1
RTFDC1Q9BY42 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
RTFDC1Q9BY42 POR-209ENST00000439269 1858 ntTSL 2 BASIC21.32■■□□□ 1
RTFDC1Q9BY42 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
RTFDC1Q9BY42 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC21.32■■□□□ 1
RTFDC1Q9BY42 REM2-202ENST00000536884 1331 ntTSL 2 BASIC21.32■■□□□ 1
RTFDC1Q9BY42 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
RTFDC1Q9BY42 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
RTFDC1Q9BY42 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC21.32■■□□□ 1
RTFDC1Q9BY42 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
RTFDC1Q9BY42 DDT-204ENST00000404092 805 ntTSL 3 BASIC21.32■■□□□ 1
RTFDC1Q9BY42 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC21.32■■□□□ 1
RTFDC1Q9BY42 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC21.32■■□□□ 1
RTFDC1Q9BY42 CXCL1P1-201ENST00000502804 216 ntBASIC21.32■■□□□ 1
RTFDC1Q9BY42 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC21.32■■□□□ 1
RTFDC1Q9BY42 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
RTFDC1Q9BY42 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC21.32■■□□□ 1
RTFDC1Q9BY42 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC21.32■■□□□ 1
RTFDC1Q9BY42 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC21.32■■□□□ 1
RTFDC1Q9BY42 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
RTFDC1Q9BY42 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
RTFDC1Q9BY42 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
RTFDC1Q9BY42 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
RTFDC1Q9BY42 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC21.32■■□□□ 1
RTFDC1Q9BY42 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
RTFDC1Q9BY42 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
RTFDC1Q9BY42 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
RTFDC1Q9BY42 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC21.32■■□□□ 1
RTFDC1Q9BY42 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
RTFDC1Q9BY42 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC21.32■■□□□ 1
RTFDC1Q9BY42 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
RTFDC1Q9BY42 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC21.32■■□□□ 1
RTFDC1Q9BY42 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
RTFDC1Q9BY42 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
RTFDC1Q9BY42 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
RTFDC1Q9BY42 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
RTFDC1Q9BY42 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC21.31■■□□□ 1
RTFDC1Q9BY42 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
RTFDC1Q9BY42 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC21.31■■□□□ 1
RTFDC1Q9BY42 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC21.31■■□□□ 1
RTFDC1Q9BY42 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC21.31■■□□□ 1
RTFDC1Q9BY42 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
RTFDC1Q9BY42 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC21.31■■□□□ 1
RTFDC1Q9BY42 AC100803.2-201ENST00000562459 1963 ntBASIC21.31■■□□□ 1
RTFDC1Q9BY42 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
RTFDC1Q9BY42 NEK7-201ENST00000367383 586 ntTSL 2 BASIC21.31■■□□□ 1
RTFDC1Q9BY42 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC21.31■■□□□ 1
RTFDC1Q9BY42 BCRP1-201ENST00000444246 691 ntBASIC21.31■■□□□ 1
RTFDC1Q9BY42 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC21.31■■□□□ 1
RTFDC1Q9BY42 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC21.31■■□□□ 1
RTFDC1Q9BY42 AL096865.1-201ENST00000606796 927 ntBASIC21.31■■□□□ 1
RTFDC1Q9BY42 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC21.31■■□□□ 1
RTFDC1Q9BY42 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC21.31■■□□□ 1
RTFDC1Q9BY42 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC21.31■■□□□ 1
RTFDC1Q9BY42 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
RTFDC1Q9BY42 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC21.3■■□□□ 1
RTFDC1Q9BY42 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC21.3■■□□□ 1
RTFDC1Q9BY42 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC21.3■■□□□ 1
RTFDC1Q9BY42 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC21.3■■□□□ 1
RTFDC1Q9BY42 AC009949.1-201ENST00000623048 1830 ntBASIC21.3■■□□□ 1
RTFDC1Q9BY42 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC21.3■■□□□ 1
RTFDC1Q9BY42 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
RTFDC1Q9BY42 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
RTFDC1Q9BY42 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
RTFDC1Q9BY42 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
RTFDC1Q9BY42 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC21.3■■□□□ 1
RTFDC1Q9BY42 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC21.3■■□□□ 1
RTFDC1Q9BY42 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC21.3■■□□□ 1
RTFDC1Q9BY42 CFL1-212ENST00000531413 636 ntTSL 3 BASIC21.3■■□□□ 1
RTFDC1Q9BY42 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC21.3■■□□□ 1
RTFDC1Q9BY42 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC21.3■■□□□ 1
RTFDC1Q9BY42 REXO1L3P-201ENST00000622202 1288 ntBASIC21.3■■□□□ 1
RTFDC1Q9BY42 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
RTFDC1Q9BY42 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC21.3■■□□□ 1
RTFDC1Q9BY42 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
RTFDC1Q9BY42 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC21.29■■□□□ 1
RTFDC1Q9BY42 AL590787.1-201ENST00000568856 1315 ntBASIC21.29■■□□□ 1
RTFDC1Q9BY42 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC21.29■■□□□ 1
RTFDC1Q9BY42 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC21.29■■□□□ 1
RTFDC1Q9BY42 AL138781.2-201ENST00000617896 1843 ntBASIC21.29■■□□□ 1
RTFDC1Q9BY42 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC21.29■■□□□ 1
RTFDC1Q9BY42 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
RTFDC1Q9BY42 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
RTFDC1Q9BY42 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC21.29■■□□□ 1
RTFDC1Q9BY42 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
RTFDC1Q9BY42 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC21.29■■□□□ 1
RTFDC1Q9BY42 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC21.29■■□□□ 1
RTFDC1Q9BY42 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC21.29■■□□□ 1
RTFDC1Q9BY42 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC21.29■■□□□ 1
RTFDC1Q9BY42 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC21.29■■□□□ 1
RTFDC1Q9BY42 CBR1-202ENST00000399191 838 ntTSL 3 BASIC21.29■■□□□ 1
RTFDC1Q9BY42 ACTG1P4-201ENST00000425123 1122 ntBASIC21.29■■□□□ 1
RTFDC1Q9BY42 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC21.29■■□□□ 1
RTFDC1Q9BY42 FAM185BP-201ENST00000443595 716 ntBASIC21.29■■□□□ 1
RTFDC1Q9BY42 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC21.29■■□□□ 1
RTFDC1Q9BY42 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC21.29■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms