Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC18.78■□□□□ 0.6
PAAF1Q9BRP4 COMP-202ENST00000425807 2292 ntTSL 2 BASIC18.78■□□□□ 0.6
PAAF1Q9BRP4 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
PAAF1Q9BRP4 AL591424.1-201ENST00000442569 1213 ntBASIC18.78■□□□□ 0.6
PAAF1Q9BRP4 S100A2-206ENST00000497140 697 ntTSL 2 BASIC18.78■□□□□ 0.6
PAAF1Q9BRP4 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
PAAF1Q9BRP4 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC18.78■□□□□ 0.6
PAAF1Q9BRP4 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC18.78■□□□□ 0.6
PAAF1Q9BRP4 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
PAAF1Q9BRP4 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC18.78■□□□□ 0.6
PAAF1Q9BRP4 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
PAAF1Q9BRP4 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
PAAF1Q9BRP4 GID4-202ENST00000376345 1391 ntTSL 3 BASIC18.78■□□□□ 0.6
PAAF1Q9BRP4 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
PAAF1Q9BRP4 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
PAAF1Q9BRP4 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
PAAF1Q9BRP4 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
PAAF1Q9BRP4 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC18.78■□□□□ 0.6
PAAF1Q9BRP4 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
PAAF1Q9BRP4 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
PAAF1Q9BRP4 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
PAAF1Q9BRP4 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC18.78■□□□□ 0.6
PAAF1Q9BRP4 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
PAAF1Q9BRP4 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC18.77■□□□□ 0.6
PAAF1Q9BRP4 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
PAAF1Q9BRP4 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
PAAF1Q9BRP4 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
PAAF1Q9BRP4 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC18.77■□□□□ 0.6
PAAF1Q9BRP4 NCF1C-201ENST00000438382 1427 ntBASIC18.77■□□□□ 0.6
PAAF1Q9BRP4 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC18.77■□□□□ 0.6
PAAF1Q9BRP4 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
PAAF1Q9BRP4 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
PAAF1Q9BRP4 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
PAAF1Q9BRP4 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC18.77■□□□□ 0.6
PAAF1Q9BRP4 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
PAAF1Q9BRP4 ARTN-206ENST00000472435 402 ntTSL 3 BASIC18.77■□□□□ 0.6
PAAF1Q9BRP4 HS6ST1P1-201ENST00000481504 1234 ntBASIC18.77■□□□□ 0.6
PAAF1Q9BRP4 AC108751.1-201ENST00000490852 363 ntBASIC18.77■□□□□ 0.6
PAAF1Q9BRP4 IGHV3-52-201ENST00000519770 353 ntBASIC18.77■□□□□ 0.6
PAAF1Q9BRP4 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC18.77■□□□□ 0.6
PAAF1Q9BRP4 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC18.77■□□□□ 0.6
PAAF1Q9BRP4 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC18.77■□□□□ 0.6
PAAF1Q9BRP4 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC18.77■□□□□ 0.6
PAAF1Q9BRP4 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
PAAF1Q9BRP4 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC18.77■□□□□ 0.6
PAAF1Q9BRP4 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
PAAF1Q9BRP4 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
PAAF1Q9BRP4 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
PAAF1Q9BRP4 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
PAAF1Q9BRP4 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
PAAF1Q9BRP4 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC18.77■□□□□ 0.59
PAAF1Q9BRP4 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
PAAF1Q9BRP4 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.59
PAAF1Q9BRP4 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
PAAF1Q9BRP4 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC18.76■□□□□ 0.59
PAAF1Q9BRP4 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
PAAF1Q9BRP4 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC18.76■□□□□ 0.59
PAAF1Q9BRP4 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
PAAF1Q9BRP4 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC18.76■□□□□ 0.59
PAAF1Q9BRP4 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
PAAF1Q9BRP4 IMP4-203ENST00000409935 958 ntTSL 5 BASIC18.76■□□□□ 0.59
PAAF1Q9BRP4 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC18.76■□□□□ 0.59
PAAF1Q9BRP4 CRCP-205ENST00000431089 942 ntTSL 2 BASIC18.76■□□□□ 0.59
PAAF1Q9BRP4 KRT18P2-201ENST00000447938 1258 ntBASIC18.76■□□□□ 0.59
PAAF1Q9BRP4 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
PAAF1Q9BRP4 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC18.76■□□□□ 0.59
PAAF1Q9BRP4 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC18.76■□□□□ 0.59
PAAF1Q9BRP4 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
PAAF1Q9BRP4 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
PAAF1Q9BRP4 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
PAAF1Q9BRP4 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
PAAF1Q9BRP4 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
PAAF1Q9BRP4 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
PAAF1Q9BRP4 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC18.76■□□□□ 0.59
PAAF1Q9BRP4 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC18.76■□□□□ 0.59
PAAF1Q9BRP4 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
PAAF1Q9BRP4 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC18.76■□□□□ 0.59
PAAF1Q9BRP4 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC18.75■□□□□ 0.59
PAAF1Q9BRP4 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
PAAF1Q9BRP4 AC097637.2-201ENST00000624096 1997 ntBASIC18.75■□□□□ 0.59
PAAF1Q9BRP4 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
PAAF1Q9BRP4 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
PAAF1Q9BRP4 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
PAAF1Q9BRP4 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
PAAF1Q9BRP4 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC18.75■□□□□ 0.59
PAAF1Q9BRP4 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
PAAF1Q9BRP4 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
PAAF1Q9BRP4 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC18.75■□□□□ 0.59
PAAF1Q9BRP4 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
PAAF1Q9BRP4 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
PAAF1Q9BRP4 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
PAAF1Q9BRP4 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
PAAF1Q9BRP4 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC18.75■□□□□ 0.59
PAAF1Q9BRP4 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC18.75■□□□□ 0.59
PAAF1Q9BRP4 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC18.75■□□□□ 0.59
PAAF1Q9BRP4 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
PAAF1Q9BRP4 AC002558.1-201ENST00000488906 803 ntBASIC18.75■□□□□ 0.59
PAAF1Q9BRP4 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC18.75■□□□□ 0.59
PAAF1Q9BRP4 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC18.75■□□□□ 0.59
PAAF1Q9BRP4 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC18.75■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 48.6 ms