Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 AL353779.1-201ENST00000434793 351 ntBASIC18.27■□□□□ 0.52
CDX2Q99626 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CDX2Q99626 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CDX2Q99626 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CDX2Q99626 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC18.27■□□□□ 0.52
CDX2Q99626 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC18.27■□□□□ 0.52
CDX2Q99626 THTPA-204ENST00000554970 569 ntTSL 4 BASIC18.27■□□□□ 0.52
CDX2Q99626 THTPA-206ENST00000556015 535 ntTSL 3 BASIC18.27■□□□□ 0.52
CDX2Q99626 AC106886.1-201ENST00000568660 600 ntBASIC18.27■□□□□ 0.52
CDX2Q99626 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC18.27■□□□□ 0.52
CDX2Q99626 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
CDX2Q99626 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
CDX2Q99626 REXO1L6P-201ENST00000603433 1515 ntBASIC18.27■□□□□ 0.51
CDX2Q99626 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC18.27■□□□□ 0.51
CDX2Q99626 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
CDX2Q99626 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC18.27■□□□□ 0.51
CDX2Q99626 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
CDX2Q99626 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CDX2Q99626 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CDX2Q99626 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC18.26■□□□□ 0.51
CDX2Q99626 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CDX2Q99626 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
CDX2Q99626 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
CDX2Q99626 DGCR5-201ENST00000399539 862 ntBASIC18.26■□□□□ 0.51
CDX2Q99626 HNRNPA3P1-201ENST00000401429 1139 ntBASIC18.26■□□□□ 0.51
CDX2Q99626 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC18.26■□□□□ 0.51
CDX2Q99626 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC18.26■□□□□ 0.51
CDX2Q99626 HNRNPA3P5-201ENST00000455201 833 ntBASIC18.26■□□□□ 0.51
CDX2Q99626 RN7SL752P-201ENST00000463779 287 ntBASIC18.26■□□□□ 0.51
CDX2Q99626 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC18.26■□□□□ 0.51
CDX2Q99626 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC18.26■□□□□ 0.51
CDX2Q99626 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC18.26■□□□□ 0.51
CDX2Q99626 HARS-203ENST00000431330 1774 ntTSL 2 BASIC18.26■□□□□ 0.51
CDX2Q99626 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CDX2Q99626 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CDX2Q99626 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CDX2Q99626 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC18.26■□□□□ 0.51
CDX2Q99626 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC18.26■□□□□ 0.51
CDX2Q99626 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CDX2Q99626 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CDX2Q99626 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CDX2Q99626 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
CDX2Q99626 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
CDX2Q99626 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
CDX2Q99626 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CDX2Q99626 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC18.25■□□□□ 0.51
CDX2Q99626 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
CDX2Q99626 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CDX2Q99626 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC18.25■□□□□ 0.51
CDX2Q99626 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CDX2Q99626 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CDX2Q99626 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
CDX2Q99626 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CDX2Q99626 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CDX2Q99626 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CDX2Q99626 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC18.25■□□□□ 0.51
CDX2Q99626 AC080129.2-201ENST00000418353 430 ntTSL 3 BASIC18.25■□□□□ 0.51
CDX2Q99626 HCG4-201ENST00000418983 998 ntBASIC18.25■□□□□ 0.51
CDX2Q99626 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC18.25■□□□□ 0.51
CDX2Q99626 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC18.25■□□□□ 0.51
CDX2Q99626 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC18.25■□□□□ 0.51
CDX2Q99626 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC18.25■□□□□ 0.51
CDX2Q99626 SLC25A6P2-201ENST00000497974 877 ntBASIC18.25■□□□□ 0.51
CDX2Q99626 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC18.25■□□□□ 0.51
CDX2Q99626 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CDX2Q99626 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC18.25■□□□□ 0.51
CDX2Q99626 AC046168.2-201ENST00000560590 875 ntTSL 3 BASIC18.25■□□□□ 0.51
CDX2Q99626 AC104794.3-201ENST00000566840 1248 ntBASIC18.25■□□□□ 0.51
CDX2Q99626 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC18.25■□□□□ 0.51
CDX2Q99626 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
CDX2Q99626 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC18.25■□□□□ 0.51
CDX2Q99626 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CDX2Q99626 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC18.25■□□□□ 0.51
CDX2Q99626 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CDX2Q99626 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC18.25■□□□□ 0.51
CDX2Q99626 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC18.25■□□□□ 0.51
CDX2Q99626 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC18.25■□□□□ 0.51
CDX2Q99626 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CDX2Q99626 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
CDX2Q99626 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
CDX2Q99626 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
CDX2Q99626 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC18.24■□□□□ 0.51
CDX2Q99626 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CDX2Q99626 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CDX2Q99626 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CDX2Q99626 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC18.24■□□□□ 0.51
CDX2Q99626 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CDX2Q99626 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CDX2Q99626 CD81-202ENST00000381036 880 ntTSL 3 BASIC18.24■□□□□ 0.51
CDX2Q99626 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC18.24■□□□□ 0.51
CDX2Q99626 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CDX2Q99626 AP006294.1-201ENST00000415407 339 ntBASIC18.24■□□□□ 0.51
CDX2Q99626 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC18.24■□□□□ 0.51
CDX2Q99626 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC18.24■□□□□ 0.51
CDX2Q99626 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
CDX2Q99626 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC18.24■□□□□ 0.51
CDX2Q99626 LGALS9C-215ENST00000584941 1104 ntTSL 5 BASIC18.24■□□□□ 0.51
CDX2Q99626 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC18.24■□□□□ 0.51
CDX2Q99626 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC18.24■□□□□ 0.51
CDX2Q99626 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms