Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
NUP88Q99567 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
NUP88Q99567 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC20.67■□□□□ 0.9
NUP88Q99567 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC20.67■□□□□ 0.9
NUP88Q99567 LITAF-211ENST00000572255 516 ntTSL 4 BASIC20.67■□□□□ 0.9
NUP88Q99567 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC20.67■□□□□ 0.9
NUP88Q99567 NKAPP1-205ENST00000585790 367 ntBASIC20.67■□□□□ 0.9
NUP88Q99567 AC025062.2-201ENST00000605477 670 ntBASIC20.67■□□□□ 0.9
NUP88Q99567 AP000867.4-201ENST00000641616 219 ntBASIC20.67■□□□□ 0.9
NUP88Q99567 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC20.67■□□□□ 0.9
NUP88Q99567 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
NUP88Q99567 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
NUP88Q99567 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
NUP88Q99567 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC20.67■□□□□ 0.9
NUP88Q99567 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
NUP88Q99567 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
NUP88Q99567 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
NUP88Q99567 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
NUP88Q99567 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
NUP88Q99567 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
NUP88Q99567 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
NUP88Q99567 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
NUP88Q99567 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
NUP88Q99567 SOD2-201ENST00000337404 991 ntTSL 2 BASIC20.66■□□□□ 0.9
NUP88Q99567 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
NUP88Q99567 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC20.66■□□□□ 0.9
NUP88Q99567 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
NUP88Q99567 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC20.66■□□□□ 0.9
NUP88Q99567 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
NUP88Q99567 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC20.66■□□□□ 0.9
NUP88Q99567 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
NUP88Q99567 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
NUP88Q99567 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC20.66■□□□□ 0.9
NUP88Q99567 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
NUP88Q99567 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
NUP88Q99567 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC20.66■□□□□ 0.9
NUP88Q99567 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
NUP88Q99567 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC20.66■□□□□ 0.9
NUP88Q99567 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
NUP88Q99567 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
NUP88Q99567 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
NUP88Q99567 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
NUP88Q99567 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
NUP88Q99567 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
NUP88Q99567 AC004817.3-201ENST00000602957 2129 ntBASIC20.65■□□□□ 0.9
NUP88Q99567 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC20.65■□□□□ 0.9
NUP88Q99567 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
NUP88Q99567 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC20.65■□□□□ 0.9
NUP88Q99567 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
NUP88Q99567 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
NUP88Q99567 SIRPAP1-201ENST00000448467 1770 ntBASIC20.65■□□□□ 0.9
NUP88Q99567 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
NUP88Q99567 ADM-208ENST00000534464 1640 ntTSL 2 BASIC20.65■□□□□ 0.9
NUP88Q99567 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
NUP88Q99567 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC20.65■□□□□ 0.9
NUP88Q99567 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
NUP88Q99567 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
NUP88Q99567 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC20.65■□□□□ 0.9
NUP88Q99567 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC20.65■□□□□ 0.9
NUP88Q99567 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC20.65■□□□□ 0.9
NUP88Q99567 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
NUP88Q99567 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
NUP88Q99567 AC012640.2-201ENST00000561606 901 ntBASIC20.65■□□□□ 0.9
NUP88Q99567 AC139887.3-201ENST00000568585 713 ntBASIC20.65■□□□□ 0.9
NUP88Q99567 PNMT-203ENST00000581428 677 ntTSL 2 BASIC20.65■□□□□ 0.9
NUP88Q99567 AC116407.3-201ENST00000623905 1129 ntBASIC20.65■□□□□ 0.9
NUP88Q99567 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
NUP88Q99567 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC20.65■□□□□ 0.9
NUP88Q99567 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.9
NUP88Q99567 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
NUP88Q99567 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC20.64■□□□□ 0.9
NUP88Q99567 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
NUP88Q99567 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
NUP88Q99567 NOC2LP1-202ENST00000452600 2235 ntBASIC20.64■□□□□ 0.89
NUP88Q99567 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
NUP88Q99567 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
NUP88Q99567 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
NUP88Q99567 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
NUP88Q99567 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC20.64■□□□□ 0.89
NUP88Q99567 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
NUP88Q99567 BX005266.1-201ENST00000473402 457 ntBASIC20.64■□□□□ 0.89
NUP88Q99567 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC20.64■□□□□ 0.89
NUP88Q99567 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
NUP88Q99567 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC20.64■□□□□ 0.89
NUP88Q99567 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
NUP88Q99567 PRKN-208ENST00000610470 531 ntTSL 2 BASIC20.64■□□□□ 0.89
NUP88Q99567 PRKN-209ENST00000612485 225 ntTSL 5 BASIC20.64■□□□□ 0.89
NUP88Q99567 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
NUP88Q99567 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC20.64■□□□□ 0.89
NUP88Q99567 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
NUP88Q99567 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
NUP88Q99567 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
NUP88Q99567 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.89
NUP88Q99567 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC20.64■□□□□ 0.89
NUP88Q99567 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
NUP88Q99567 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
NUP88Q99567 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC20.64■□□□□ 0.89
NUP88Q99567 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
NUP88Q99567 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
NUP88Q99567 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms