Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 STK19B-204ENST00000512515 211 ntBASIC18■□□□□ 0.47
SLC44A3Q8N4M1 LSM12-202ENST00000585388 942 ntTSL 3 BASIC18■□□□□ 0.47
SLC44A3Q8N4M1 TMED1-207ENST00000591695 809 ntTSL 5 BASIC18■□□□□ 0.47
SLC44A3Q8N4M1 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SLC44A3Q8N4M1 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
SLC44A3Q8N4M1 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC18■□□□□ 0.47
SLC44A3Q8N4M1 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC18■□□□□ 0.47
SLC44A3Q8N4M1 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC18■□□□□ 0.47
SLC44A3Q8N4M1 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC17.99■□□□□ 0.47
SLC44A3Q8N4M1 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC17.99■□□□□ 0.47
SLC44A3Q8N4M1 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SLC44A3Q8N4M1 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
SLC44A3Q8N4M1 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
SLC44A3Q8N4M1 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
SLC44A3Q8N4M1 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SLC44A3Q8N4M1 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC17.99■□□□□ 0.47
SLC44A3Q8N4M1 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
SLC44A3Q8N4M1 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC17.99■□□□□ 0.47
SLC44A3Q8N4M1 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
SLC44A3Q8N4M1 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC17.99■□□□□ 0.47
SLC44A3Q8N4M1 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC17.99■□□□□ 0.47
SLC44A3Q8N4M1 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
SLC44A3Q8N4M1 AC244107.1-201ENST00000442033 332 ntBASIC17.99■□□□□ 0.47
SLC44A3Q8N4M1 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SLC44A3Q8N4M1 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC17.99■□□□□ 0.47
SLC44A3Q8N4M1 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
SLC44A3Q8N4M1 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC17.99■□□□□ 0.47
SLC44A3Q8N4M1 RPL28-205ENST00000558131 444 ntTSL 5 BASIC17.99■□□□□ 0.47
SLC44A3Q8N4M1 AC025678.2-201ENST00000562061 970 ntBASIC17.99■□□□□ 0.47
SLC44A3Q8N4M1 AL353135.1-201ENST00000606729 504 ntBASIC17.99■□□□□ 0.47
SLC44A3Q8N4M1 SP100-208ENST00000427101 1922 ntTSL 2 BASIC17.99■□□□□ 0.47
SLC44A3Q8N4M1 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC17.99■□□□□ 0.47
SLC44A3Q8N4M1 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
SLC44A3Q8N4M1 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
SLC44A3Q8N4M1 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
SLC44A3Q8N4M1 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SLC44A3Q8N4M1 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC17.99■□□□□ 0.47
SLC44A3Q8N4M1 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC17.99■□□□□ 0.47
SLC44A3Q8N4M1 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC17.99■□□□□ 0.47
SLC44A3Q8N4M1 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC17.98■□□□□ 0.47
SLC44A3Q8N4M1 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
SLC44A3Q8N4M1 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SLC44A3Q8N4M1 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC17.98■□□□□ 0.47
SLC44A3Q8N4M1 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC17.98■□□□□ 0.47
SLC44A3Q8N4M1 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SLC44A3Q8N4M1 AC126763.1-201ENST00000552015 2118 ntBASIC17.98■□□□□ 0.47
SLC44A3Q8N4M1 AL020996.1-203ENST00000536896 2307 ntBASIC17.98■□□□□ 0.47
SLC44A3Q8N4M1 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC17.98■□□□□ 0.47
SLC44A3Q8N4M1 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SLC44A3Q8N4M1 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC17.98■□□□□ 0.47
SLC44A3Q8N4M1 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
SLC44A3Q8N4M1 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC17.98■□□□□ 0.47
SLC44A3Q8N4M1 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
SLC44A3Q8N4M1 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
SLC44A3Q8N4M1 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC17.98■□□□□ 0.47
SLC44A3Q8N4M1 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC17.98■□□□□ 0.47
SLC44A3Q8N4M1 DAD1-205ENST00000543337 501 ntTSL 3 BASIC17.98■□□□□ 0.47
SLC44A3Q8N4M1 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
SLC44A3Q8N4M1 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC17.98■□□□□ 0.47
SLC44A3Q8N4M1 STK25P1-201ENST00000585406 838 ntBASIC17.98■□□□□ 0.47
SLC44A3Q8N4M1 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
SLC44A3Q8N4M1 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC17.98■□□□□ 0.47
SLC44A3Q8N4M1 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC17.98■□□□□ 0.47
SLC44A3Q8N4M1 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC17.98■□□□□ 0.47
SLC44A3Q8N4M1 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
SLC44A3Q8N4M1 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
SLC44A3Q8N4M1 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC17.98■□□□□ 0.47
SLC44A3Q8N4M1 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC17.98■□□□□ 0.47
SLC44A3Q8N4M1 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
SLC44A3Q8N4M1 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC17.98■□□□□ 0.47
SLC44A3Q8N4M1 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SLC44A3Q8N4M1 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
SLC44A3Q8N4M1 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SLC44A3Q8N4M1 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
SLC44A3Q8N4M1 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SLC44A3Q8N4M1 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SLC44A3Q8N4M1 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
SLC44A3Q8N4M1 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SLC44A3Q8N4M1 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC17.97■□□□□ 0.47
SLC44A3Q8N4M1 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SLC44A3Q8N4M1 AC092474.2-201ENST00000424288 719 ntBASIC17.97■□□□□ 0.47
SLC44A3Q8N4M1 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SLC44A3Q8N4M1 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC17.97■□□□□ 0.47
SLC44A3Q8N4M1 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC17.97■□□□□ 0.47
SLC44A3Q8N4M1 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC17.97■□□□□ 0.47
SLC44A3Q8N4M1 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC17.97■□□□□ 0.47
SLC44A3Q8N4M1 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC17.97■□□□□ 0.47
SLC44A3Q8N4M1 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SLC44A3Q8N4M1 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SLC44A3Q8N4M1 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
SLC44A3Q8N4M1 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SLC44A3Q8N4M1 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
SLC44A3Q8N4M1 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC17.97■□□□□ 0.47
SLC44A3Q8N4M1 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
SLC44A3Q8N4M1 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SLC44A3Q8N4M1 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
SLC44A3Q8N4M1 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SLC44A3Q8N4M1 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC17.96■□□□□ 0.47
SLC44A3Q8N4M1 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC17.96■□□□□ 0.47
SLC44A3Q8N4M1 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 44.2 ms