Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
CCDC60Q8IWA6 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC19.61■□□□□ 0.73
CCDC60Q8IWA6 AC092910.1-201ENST00000482027 1129 ntBASIC19.61■□□□□ 0.73
CCDC60Q8IWA6 IGHV3-22-201ENST00000520721 359 ntBASIC19.61■□□□□ 0.73
CCDC60Q8IWA6 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC19.61■□□□□ 0.73
CCDC60Q8IWA6 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC60Q8IWA6 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC60Q8IWA6 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC60Q8IWA6 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
CCDC60Q8IWA6 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
CCDC60Q8IWA6 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC60Q8IWA6 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC60Q8IWA6 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC60Q8IWA6 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC60Q8IWA6 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC60Q8IWA6 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC60Q8IWA6 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC19.6■□□□□ 0.73
CCDC60Q8IWA6 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC19.6■□□□□ 0.73
CCDC60Q8IWA6 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC60Q8IWA6 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC60Q8IWA6 AC005104.2-201ENST00000427818 678 ntBASIC19.6■□□□□ 0.73
CCDC60Q8IWA6 AC098831.1-202ENST00000438821 336 ntBASIC19.6■□□□□ 0.73
CCDC60Q8IWA6 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC19.6■□□□□ 0.73
CCDC60Q8IWA6 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC19.6■□□□□ 0.73
CCDC60Q8IWA6 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC19.6■□□□□ 0.73
CCDC60Q8IWA6 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC19.6■□□□□ 0.73
CCDC60Q8IWA6 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC19.6■□□□□ 0.73
CCDC60Q8IWA6 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC60Q8IWA6 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC19.6■□□□□ 0.73
CCDC60Q8IWA6 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC60Q8IWA6 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC60Q8IWA6 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC60Q8IWA6 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC60Q8IWA6 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC60Q8IWA6 AC020763.4-201ENST00000623414 4170 ntBASIC19.59■□□□□ 0.73
CCDC60Q8IWA6 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC19.59■□□□□ 0.73
CCDC60Q8IWA6 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC60Q8IWA6 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC60Q8IWA6 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC60Q8IWA6 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC19.59■□□□□ 0.73
CCDC60Q8IWA6 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
CCDC60Q8IWA6 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC60Q8IWA6 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC19.59■□□□□ 0.73
CCDC60Q8IWA6 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC19.59■□□□□ 0.73
CCDC60Q8IWA6 RPL13AP23-201ENST00000480739 586 ntBASIC19.59■□□□□ 0.73
CCDC60Q8IWA6 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC60Q8IWA6 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC19.59■□□□□ 0.73
CCDC60Q8IWA6 IGHV3-52-201ENST00000519770 353 ntBASIC19.59■□□□□ 0.73
CCDC60Q8IWA6 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC19.59■□□□□ 0.73
CCDC60Q8IWA6 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
CCDC60Q8IWA6 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC19.59■□□□□ 0.73
CCDC60Q8IWA6 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC19.59■□□□□ 0.73
CCDC60Q8IWA6 AC105339.3-201ENST00000560043 636 ntBASIC19.59■□□□□ 0.73
CCDC60Q8IWA6 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC19.59■□□□□ 0.73
CCDC60Q8IWA6 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC60Q8IWA6 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC19.59■□□□□ 0.73
CCDC60Q8IWA6 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC19.59■□□□□ 0.73
CCDC60Q8IWA6 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC60Q8IWA6 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC60Q8IWA6 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC19.59■□□□□ 0.73
CCDC60Q8IWA6 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC19.59■□□□□ 0.73
CCDC60Q8IWA6 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC19.59■□□□□ 0.73
CCDC60Q8IWA6 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC60Q8IWA6 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CCDC60Q8IWA6 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CCDC60Q8IWA6 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
CCDC60Q8IWA6 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
CCDC60Q8IWA6 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CCDC60Q8IWA6 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC19.58■□□□□ 0.73
CCDC60Q8IWA6 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CCDC60Q8IWA6 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
CCDC60Q8IWA6 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.73
CCDC60Q8IWA6 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
CCDC60Q8IWA6 AL390961.4-201ENST00000623958 2535 ntBASIC19.58■□□□□ 0.73
CCDC60Q8IWA6 AC012317.2-201ENST00000623305 2251 ntBASIC19.58■□□□□ 0.73
CCDC60Q8IWA6 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC19.58■□□□□ 0.73
CCDC60Q8IWA6 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.73
CCDC60Q8IWA6 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
CCDC60Q8IWA6 MIR574-201ENST00000385209 96 ntBASIC19.58■□□□□ 0.72
CCDC60Q8IWA6 KRT18P27-201ENST00000427733 1299 ntBASIC19.58■□□□□ 0.72
CCDC60Q8IWA6 STK19B-204ENST00000512515 211 ntBASIC19.58■□□□□ 0.72
CCDC60Q8IWA6 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC19.58■□□□□ 0.72
CCDC60Q8IWA6 AC106730.1-201ENST00000566722 1090 ntBASIC19.58■□□□□ 0.72
CCDC60Q8IWA6 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC19.58■□□□□ 0.72
CCDC60Q8IWA6 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
CCDC60Q8IWA6 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
CCDC60Q8IWA6 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
CCDC60Q8IWA6 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
CCDC60Q8IWA6 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CCDC60Q8IWA6 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
CCDC60Q8IWA6 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.72
CCDC60Q8IWA6 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC60Q8IWA6 AC009336.1-201ENST00000608941 1553 ntBASIC19.57■□□□□ 0.72
CCDC60Q8IWA6 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC19.57■□□□□ 0.72
CCDC60Q8IWA6 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC60Q8IWA6 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC19.57■□□□□ 0.72
CCDC60Q8IWA6 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC19.57■□□□□ 0.72
CCDC60Q8IWA6 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC19.57■□□□□ 0.72
CCDC60Q8IWA6 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC60Q8IWA6 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms