Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC23.79■■□□□ 1.4
NPHP3Q7Z494 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC23.79■■□□□ 1.4
NPHP3Q7Z494 TSFM-210ENST00000550559 897 ntTSL 5 BASIC23.79■■□□□ 1.4
NPHP3Q7Z494 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
NPHP3Q7Z494 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC23.79■■□□□ 1.4
NPHP3Q7Z494 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC23.79■■□□□ 1.4
NPHP3Q7Z494 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC23.79■■□□□ 1.4
NPHP3Q7Z494 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
NPHP3Q7Z494 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
NPHP3Q7Z494 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
NPHP3Q7Z494 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
NPHP3Q7Z494 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC23.78■■□□□ 1.4
NPHP3Q7Z494 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
NPHP3Q7Z494 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
NPHP3Q7Z494 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
NPHP3Q7Z494 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
NPHP3Q7Z494 AC100803.2-201ENST00000562459 1963 ntBASIC23.78■■□□□ 1.4
NPHP3Q7Z494 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
NPHP3Q7Z494 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC23.78■■□□□ 1.4
NPHP3Q7Z494 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
NPHP3Q7Z494 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
NPHP3Q7Z494 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC23.78■■□□□ 1.4
NPHP3Q7Z494 MIR943-201ENST00000401286 94 ntBASIC23.78■■□□□ 1.4
NPHP3Q7Z494 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC23.78■■□□□ 1.4
NPHP3Q7Z494 KLF2P3-201ENST00000451977 1087 ntBASIC23.78■■□□□ 1.4
NPHP3Q7Z494 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC23.78■■□□□ 1.4
NPHP3Q7Z494 RN7SL589P-201ENST00000481268 310 ntBASIC23.78■■□□□ 1.4
NPHP3Q7Z494 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC23.78■■□□□ 1.4
NPHP3Q7Z494 AC002558.1-201ENST00000488906 803 ntBASIC23.78■■□□□ 1.4
NPHP3Q7Z494 HARS-201ENST00000307633 1780 ntTSL 2 BASIC23.78■■□□□ 1.4
NPHP3Q7Z494 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC23.78■■□□□ 1.4
NPHP3Q7Z494 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
NPHP3Q7Z494 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC23.77■■□□□ 1.4
NPHP3Q7Z494 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC23.77■■□□□ 1.4
NPHP3Q7Z494 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
NPHP3Q7Z494 TUBB3P1-201ENST00000405796 1332 ntBASIC23.77■■□□□ 1.4
NPHP3Q7Z494 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC23.77■■□□□ 1.4
NPHP3Q7Z494 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC23.77■■□□□ 1.4
NPHP3Q7Z494 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC23.77■■□□□ 1.4
NPHP3Q7Z494 KRT18P32-201ENST00000424695 1287 ntBASIC23.77■■□□□ 1.4
NPHP3Q7Z494 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC23.77■■□□□ 1.4
NPHP3Q7Z494 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC23.77■■□□□ 1.4
NPHP3Q7Z494 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC23.77■■□□□ 1.4
NPHP3Q7Z494 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
NPHP3Q7Z494 AC116407.2-201ENST00000613639 860 ntBASIC23.77■■□□□ 1.4
NPHP3Q7Z494 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC23.76■■□□□ 1.39
NPHP3Q7Z494 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
NPHP3Q7Z494 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
NPHP3Q7Z494 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
NPHP3Q7Z494 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
NPHP3Q7Z494 EDF1-203ENST00000371649 790 ntTSL 2 BASIC23.76■■□□□ 1.39
NPHP3Q7Z494 CENPM-205ENST00000404067 905 ntTSL 3 BASIC23.76■■□□□ 1.39
NPHP3Q7Z494 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC23.76■■□□□ 1.39
NPHP3Q7Z494 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC23.76■■□□□ 1.39
NPHP3Q7Z494 AC140658.5-201ENST00000438532 169 ntBASIC23.76■■□□□ 1.39
NPHP3Q7Z494 AL592309.1-201ENST00000443127 649 ntBASIC23.76■■□□□ 1.39
NPHP3Q7Z494 UGT1A2P-201ENST00000454886 866 ntBASIC23.76■■□□□ 1.39
NPHP3Q7Z494 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC23.76■■□□□ 1.39
NPHP3Q7Z494 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC23.76■■□□□ 1.39
NPHP3Q7Z494 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC23.76■■□□□ 1.39
NPHP3Q7Z494 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC23.76■■□□□ 1.39
NPHP3Q7Z494 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC23.76■■□□□ 1.39
NPHP3Q7Z494 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC23.76■■□□□ 1.39
NPHP3Q7Z494 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC23.76■■□□□ 1.39
NPHP3Q7Z494 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC23.75■■□□□ 1.39
NPHP3Q7Z494 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC23.75■■□□□ 1.39
NPHP3Q7Z494 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC23.75■■□□□ 1.39
NPHP3Q7Z494 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC23.75■■□□□ 1.39
NPHP3Q7Z494 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC23.75■■□□□ 1.39
NPHP3Q7Z494 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC23.75■■□□□ 1.39
NPHP3Q7Z494 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
NPHP3Q7Z494 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC23.75■■□□□ 1.39
NPHP3Q7Z494 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
NPHP3Q7Z494 RPL30-202ENST00000396070 440 ntTSL 2 BASIC23.75■■□□□ 1.39
NPHP3Q7Z494 AC079140.1-201ENST00000508039 487 ntBASIC23.75■■□□□ 1.39
NPHP3Q7Z494 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC23.75■■□□□ 1.39
NPHP3Q7Z494 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
NPHP3Q7Z494 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
NPHP3Q7Z494 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC23.75■■□□□ 1.39
NPHP3Q7Z494 HFE2-206ENST00000634927 506 ntTSL 4 BASIC23.75■■□□□ 1.39
NPHP3Q7Z494 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC23.75■■□□□ 1.39
NPHP3Q7Z494 AC126763.1-201ENST00000552015 2118 ntBASIC23.75■■□□□ 1.39
NPHP3Q7Z494 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC23.75■■□□□ 1.39
NPHP3Q7Z494 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
NPHP3Q7Z494 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC23.75■■□□□ 1.39
NPHP3Q7Z494 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
NPHP3Q7Z494 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC23.74■■□□□ 1.39
NPHP3Q7Z494 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
NPHP3Q7Z494 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC23.74■■□□□ 1.39
NPHP3Q7Z494 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
NPHP3Q7Z494 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC23.74■■□□□ 1.39
NPHP3Q7Z494 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC23.74■■□□□ 1.39
NPHP3Q7Z494 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC23.74■■□□□ 1.39
NPHP3Q7Z494 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC23.74■■□□□ 1.39
NPHP3Q7Z494 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
NPHP3Q7Z494 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC23.74■■□□□ 1.39
NPHP3Q7Z494 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC23.74■■□□□ 1.39
NPHP3Q7Z494 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC23.74■■□□□ 1.39
NPHP3Q7Z494 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC23.74■■□□□ 1.39
NPHP3Q7Z494 CYP51A1P2-201ENST00000419457 1499 ntBASIC23.74■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 46.7 ms