Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
KRT39Q6A163 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
KRT39Q6A163 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
KRT39Q6A163 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
KRT39Q6A163 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
KRT39Q6A163 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
KRT39Q6A163 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.65
KRT39Q6A163 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
KRT39Q6A163 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
KRT39Q6A163 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.65
KRT39Q6A163 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC19.08■□□□□ 0.65
KRT39Q6A163 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC19.08■□□□□ 0.65
KRT39Q6A163 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
KRT39Q6A163 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC19.08■□□□□ 0.64
KRT39Q6A163 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC19.08■□□□□ 0.64
KRT39Q6A163 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
KRT39Q6A163 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC19.08■□□□□ 0.64
KRT39Q6A163 MINOS1P3-201ENST00000457048 203 ntBASIC19.08■□□□□ 0.64
KRT39Q6A163 AC002558.1-201ENST00000488906 803 ntBASIC19.08■□□□□ 0.64
KRT39Q6A163 AP000867.3-201ENST00000524675 377 ntBASIC19.08■□□□□ 0.64
KRT39Q6A163 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC19.08■□□□□ 0.64
KRT39Q6A163 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC19.08■□□□□ 0.64
KRT39Q6A163 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC19.08■□□□□ 0.64
KRT39Q6A163 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.64
KRT39Q6A163 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
KRT39Q6A163 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
KRT39Q6A163 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
KRT39Q6A163 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
KRT39Q6A163 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC19.08■□□□□ 0.64
KRT39Q6A163 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
KRT39Q6A163 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
KRT39Q6A163 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
KRT39Q6A163 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC19.07■□□□□ 0.64
KRT39Q6A163 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
KRT39Q6A163 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC19.07■□□□□ 0.64
KRT39Q6A163 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC19.07■□□□□ 0.64
KRT39Q6A163 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
KRT39Q6A163 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
KRT39Q6A163 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
KRT39Q6A163 EML3-217ENST00000531557 2509 ntTSL 5 BASIC19.07■□□□□ 0.64
KRT39Q6A163 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
KRT39Q6A163 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
KRT39Q6A163 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
KRT39Q6A163 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
KRT39Q6A163 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC19.07■□□□□ 0.64
KRT39Q6A163 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
KRT39Q6A163 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
KRT39Q6A163 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC19.07■□□□□ 0.64
KRT39Q6A163 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC19.07■□□□□ 0.64
KRT39Q6A163 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
KRT39Q6A163 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC19.07■□□□□ 0.64
KRT39Q6A163 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC19.07■□□□□ 0.64
KRT39Q6A163 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
KRT39Q6A163 AC074051.2-201ENST00000565115 352 ntBASIC19.07■□□□□ 0.64
KRT39Q6A163 AC012615.1-201ENST00000565797 1299 ntBASIC19.07■□□□□ 0.64
KRT39Q6A163 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
KRT39Q6A163 AC011467.2-201ENST00000598425 242 ntBASIC19.07■□□□□ 0.64
KRT39Q6A163 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC19.07■□□□□ 0.64
KRT39Q6A163 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
KRT39Q6A163 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
KRT39Q6A163 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
KRT39Q6A163 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
KRT39Q6A163 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
KRT39Q6A163 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
KRT39Q6A163 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
KRT39Q6A163 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
KRT39Q6A163 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
KRT39Q6A163 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
KRT39Q6A163 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
KRT39Q6A163 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
KRT39Q6A163 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
KRT39Q6A163 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
KRT39Q6A163 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
KRT39Q6A163 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC19.06■□□□□ 0.64
KRT39Q6A163 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC19.06■□□□□ 0.64
KRT39Q6A163 TP73-AS1-210ENST00000637775 1455 ntBASIC19.06■□□□□ 0.64
KRT39Q6A163 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC19.06■□□□□ 0.64
KRT39Q6A163 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
KRT39Q6A163 AC103564.2-201ENST00000432853 1299 ntBASIC19.06■□□□□ 0.64
KRT39Q6A163 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
KRT39Q6A163 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC19.06■□□□□ 0.64
KRT39Q6A163 AC104819.1-201ENST00000504587 486 ntBASIC19.06■□□□□ 0.64
KRT39Q6A163 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC19.06■□□□□ 0.64
KRT39Q6A163 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
KRT39Q6A163 BNIP3P18-201ENST00000593976 575 ntBASIC19.06■□□□□ 0.64
KRT39Q6A163 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC19.06■□□□□ 0.64
KRT39Q6A163 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
KRT39Q6A163 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
KRT39Q6A163 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
KRT39Q6A163 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
KRT39Q6A163 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
KRT39Q6A163 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC19.06■□□□□ 0.64
KRT39Q6A163 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
KRT39Q6A163 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
KRT39Q6A163 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC19.06■□□□□ 0.64
KRT39Q6A163 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC19.06■□□□□ 0.64
KRT39Q6A163 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
KRT39Q6A163 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
KRT39Q6A163 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC19.05■□□□□ 0.64
KRT39Q6A163 PP12613-201ENST00000424958 2230 ntBASIC19.05■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 43.1 ms