Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC21.44■■□□□ 1.02
CCDC88AQ3V6T2 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC21.43■■□□□ 1.02
CCDC88AQ3V6T2 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC21.43■■□□□ 1.02
CCDC88AQ3V6T2 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC21.43■■□□□ 1.02
CCDC88AQ3V6T2 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CCDC88AQ3V6T2 AP002414.1-201ENST00000391405 1147 ntBASIC21.43■■□□□ 1.02
CCDC88AQ3V6T2 HLA-DRB6-201ENST00000411500 1235 ntBASIC21.43■■□□□ 1.02
CCDC88AQ3V6T2 TSPY16P-201ENST00000449843 468 ntBASIC21.43■■□□□ 1.02
CCDC88AQ3V6T2 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC21.43■■□□□ 1.02
CCDC88AQ3V6T2 NAA60-208ENST00000570819 833 ntTSL 2 BASIC21.43■■□□□ 1.02
CCDC88AQ3V6T2 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC21.43■■□□□ 1.02
CCDC88AQ3V6T2 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CCDC88AQ3V6T2 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
CCDC88AQ3V6T2 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
CCDC88AQ3V6T2 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
CCDC88AQ3V6T2 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CCDC88AQ3V6T2 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CCDC88AQ3V6T2 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC21.43■■□□□ 1.02
CCDC88AQ3V6T2 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC21.43■■□□□ 1.02
CCDC88AQ3V6T2 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CCDC88AQ3V6T2 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC21.43■■□□□ 1.02
CCDC88AQ3V6T2 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CCDC88AQ3V6T2 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC21.43■■□□□ 1.02
CCDC88AQ3V6T2 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CCDC88AQ3V6T2 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CCDC88AQ3V6T2 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
CCDC88AQ3V6T2 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC21.43■■□□□ 1.02
CCDC88AQ3V6T2 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC21.43■■□□□ 1.02
CCDC88AQ3V6T2 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC21.43■■□□□ 1.02
CCDC88AQ3V6T2 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC21.43■■□□□ 1.02
CCDC88AQ3V6T2 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC21.43■■□□□ 1.02
CCDC88AQ3V6T2 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC21.43■■□□□ 1.02
CCDC88AQ3V6T2 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC21.43■■□□□ 1.02
CCDC88AQ3V6T2 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC21.43■■□□□ 1.02
CCDC88AQ3V6T2 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC21.43■■□□□ 1.02
CCDC88AQ3V6T2 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC21.43■■□□□ 1.02
CCDC88AQ3V6T2 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC21.43■■□□□ 1.02
CCDC88AQ3V6T2 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
CCDC88AQ3V6T2 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
CCDC88AQ3V6T2 AC100803.2-201ENST00000562459 1963 ntBASIC21.42■■□□□ 1.02
CCDC88AQ3V6T2 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
CCDC88AQ3V6T2 AC092919.2-201ENST00000623631 1645 ntBASIC21.42■■□□□ 1.02
CCDC88AQ3V6T2 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC21.42■■□□□ 1.02
CCDC88AQ3V6T2 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
CCDC88AQ3V6T2 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
CCDC88AQ3V6T2 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
CCDC88AQ3V6T2 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
CCDC88AQ3V6T2 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC21.42■■□□□ 1.02
CCDC88AQ3V6T2 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC21.42■■□□□ 1.02
CCDC88AQ3V6T2 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC21.42■■□□□ 1.02
CCDC88AQ3V6T2 AC004835.2-201ENST00000603762 682 ntBASIC21.42■■□□□ 1.02
CCDC88AQ3V6T2 AC099522.2-201ENST00000607001 744 ntBASIC21.42■■□□□ 1.02
CCDC88AQ3V6T2 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC21.42■■□□□ 1.02
CCDC88AQ3V6T2 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
CCDC88AQ3V6T2 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CCDC88AQ3V6T2 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC21.41■■□□□ 1.02
CCDC88AQ3V6T2 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CCDC88AQ3V6T2 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
CCDC88AQ3V6T2 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC21.41■■□□□ 1.02
CCDC88AQ3V6T2 EDF1-203ENST00000371649 790 ntTSL 2 BASIC21.41■■□□□ 1.02
CCDC88AQ3V6T2 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
CCDC88AQ3V6T2 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC21.41■■□□□ 1.02
CCDC88AQ3V6T2 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
CCDC88AQ3V6T2 AC025678.2-201ENST00000562061 970 ntBASIC21.41■■□□□ 1.02
CCDC88AQ3V6T2 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC21.41■■□□□ 1.02
CCDC88AQ3V6T2 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CCDC88AQ3V6T2 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC21.41■■□□□ 1.02
CCDC88AQ3V6T2 YTHDF3-AS1-201ENST00000603538 718 ntBASIC21.41■■□□□ 1.02
CCDC88AQ3V6T2 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC21.41■■□□□ 1.02
CCDC88AQ3V6T2 MADD-208ENST00000405573 1823 ntTSL 5 BASIC21.41■■□□□ 1.02
CCDC88AQ3V6T2 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC21.41■■□□□ 1.02
CCDC88AQ3V6T2 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC21.41■■□□□ 1.02
CCDC88AQ3V6T2 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC21.41■■□□□ 1.02
CCDC88AQ3V6T2 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC21.41■■□□□ 1.02
CCDC88AQ3V6T2 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
CCDC88AQ3V6T2 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
CCDC88AQ3V6T2 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CCDC88AQ3V6T2 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC21.41■■□□□ 1.02
CCDC88AQ3V6T2 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CCDC88AQ3V6T2 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
CCDC88AQ3V6T2 AL138781.2-201ENST00000617896 1843 ntBASIC21.41■■□□□ 1.02
CCDC88AQ3V6T2 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
CCDC88AQ3V6T2 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC21.41■■□□□ 1.02
CCDC88AQ3V6T2 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC21.41■■□□□ 1.02
CCDC88AQ3V6T2 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC21.41■■□□□ 1.02
CCDC88AQ3V6T2 DDX43P3-201ENST00000441064 443 ntBASIC21.41■■□□□ 1.02
CCDC88AQ3V6T2 UGT1A2P-201ENST00000454886 866 ntBASIC21.41■■□□□ 1.02
CCDC88AQ3V6T2 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC21.41■■□□□ 1.02
CCDC88AQ3V6T2 AC096734.2-201ENST00000562054 433 ntBASIC21.41■■□□□ 1.02
CCDC88AQ3V6T2 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC21.41■■□□□ 1.02
CCDC88AQ3V6T2 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC21.41■■□□□ 1.02
CCDC88AQ3V6T2 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC21.41■■□□□ 1.02
CCDC88AQ3V6T2 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC21.41■■□□□ 1.02
CCDC88AQ3V6T2 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CCDC88AQ3V6T2 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CCDC88AQ3V6T2 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CCDC88AQ3V6T2 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC21.4■■□□□ 1.02
CCDC88AQ3V6T2 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC21.4■■□□□ 1.02
CCDC88AQ3V6T2 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CCDC88AQ3V6T2 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC21.4■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms