Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC16.46■□□□□ 0.23
RFX4Q33E94 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC16.46■□□□□ 0.23
RFX4Q33E94 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
RFX4Q33E94 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
RFX4Q33E94 PRR31-201ENST00000371629 978 ntTSL 2 BASIC16.46■□□□□ 0.23
RFX4Q33E94 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
RFX4Q33E94 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC16.46■□□□□ 0.23
RFX4Q33E94 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC16.46■□□□□ 0.23
RFX4Q33E94 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC16.46■□□□□ 0.23
RFX4Q33E94 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
RFX4Q33E94 AP003071.4-201ENST00000562276 1284 ntBASIC16.46■□□□□ 0.23
RFX4Q33E94 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
RFX4Q33E94 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC16.46■□□□□ 0.23
RFX4Q33E94 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
RFX4Q33E94 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC16.46■□□□□ 0.23
RFX4Q33E94 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
RFX4Q33E94 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
RFX4Q33E94 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
RFX4Q33E94 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
RFX4Q33E94 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
RFX4Q33E94 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC16.46■□□□□ 0.23
RFX4Q33E94 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
RFX4Q33E94 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
RFX4Q33E94 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
RFX4Q33E94 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
RFX4Q33E94 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.22
RFX4Q33E94 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.22
RFX4Q33E94 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
RFX4Q33E94 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
RFX4Q33E94 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
RFX4Q33E94 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RFX4Q33E94 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RFX4Q33E94 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
RFX4Q33E94 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
RFX4Q33E94 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
RFX4Q33E94 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
RFX4Q33E94 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
RFX4Q33E94 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RFX4Q33E94 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC16.45■□□□□ 0.22
RFX4Q33E94 UBALD1-205ENST00000590891 2641 ntBASIC16.45■□□□□ 0.22
RFX4Q33E94 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC16.45■□□□□ 0.22
RFX4Q33E94 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
RFX4Q33E94 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RFX4Q33E94 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RFX4Q33E94 UNC93B2-201ENST00000285383 730 ntBASIC16.45■□□□□ 0.22
RFX4Q33E94 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RFX4Q33E94 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RFX4Q33E94 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC16.45■□□□□ 0.22
RFX4Q33E94 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC16.45■□□□□ 0.22
RFX4Q33E94 MIR3180-4-201ENST00000582223 153 ntBASIC16.45■□□□□ 0.22
RFX4Q33E94 Z99916.2-201ENST00000604037 246 ntBASIC16.45■□□□□ 0.22
RFX4Q33E94 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC16.45■□□□□ 0.22
RFX4Q33E94 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC16.45■□□□□ 0.22
RFX4Q33E94 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
RFX4Q33E94 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
RFX4Q33E94 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
RFX4Q33E94 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RFX4Q33E94 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
RFX4Q33E94 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RFX4Q33E94 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
RFX4Q33E94 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
RFX4Q33E94 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
RFX4Q33E94 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RFX4Q33E94 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC16.45■□□□□ 0.22
RFX4Q33E94 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC16.45■□□□□ 0.22
RFX4Q33E94 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
RFX4Q33E94 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
RFX4Q33E94 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC16.45■□□□□ 0.22
RFX4Q33E94 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
RFX4Q33E94 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC16.45■□□□□ 0.22
RFX4Q33E94 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
RFX4Q33E94 MME-217ENST00000616757 1315 ntTSL 5 BASIC16.45■□□□□ 0.22
RFX4Q33E94 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
RFX4Q33E94 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
RFX4Q33E94 DOC2GP-204ENST00000639052 2548 ntBASIC16.44■□□□□ 0.22
RFX4Q33E94 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
RFX4Q33E94 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC16.44■□□□□ 0.22
RFX4Q33E94 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
RFX4Q33E94 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
RFX4Q33E94 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
RFX4Q33E94 HIST1H2APS4-201ENST00000362070 348 ntBASIC16.44■□□□□ 0.22
RFX4Q33E94 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC16.44■□□□□ 0.22
RFX4Q33E94 CCR12P-201ENST00000446203 998 ntBASIC16.44■□□□□ 0.22
RFX4Q33E94 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC16.44■□□□□ 0.22
RFX4Q33E94 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC16.44■□□□□ 0.22
RFX4Q33E94 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC16.44■□□□□ 0.22
RFX4Q33E94 AC104390.1-201ENST00000555663 520 ntBASIC16.44■□□□□ 0.22
RFX4Q33E94 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC16.44■□□□□ 0.22
RFX4Q33E94 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
RFX4Q33E94 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC16.44■□□□□ 0.22
RFX4Q33E94 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
RFX4Q33E94 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC16.44■□□□□ 0.22
RFX4Q33E94 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
RFX4Q33E94 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC16.44■□□□□ 0.22
RFX4Q33E94 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
RFX4Q33E94 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
RFX4Q33E94 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
RFX4Q33E94 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
RFX4Q33E94 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
RFX4Q33E94 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC16.44■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms