Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 LINC01225-203ENST00000563550 1244 ntBASIC12.52□□□□□ -0.4
COL7A1Q02388 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC12.52□□□□□ -0.4
COL7A1Q02388 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC12.52□□□□□ -0.4
COL7A1Q02388 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC12.52□□□□□ -0.4
COL7A1Q02388 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
COL7A1Q02388 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC12.52□□□□□ -0.4
COL7A1Q02388 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC12.52□□□□□ -0.4
COL7A1Q02388 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
COL7A1Q02388 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
COL7A1Q02388 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.4
COL7A1Q02388 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.41
COL7A1Q02388 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC12.52□□□□□ -0.41
COL7A1Q02388 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC12.52□□□□□ -0.41
COL7A1Q02388 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.41
COL7A1Q02388 NOP2-211ENST00000540228 668 ntTSL 2 BASIC12.52□□□□□ -0.41
COL7A1Q02388 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC12.52□□□□□ -0.41
COL7A1Q02388 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.41
COL7A1Q02388 MIR6799-201ENST00000620297 69 ntBASIC12.52□□□□□ -0.41
COL7A1Q02388 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC12.52□□□□□ -0.41
COL7A1Q02388 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
COL7A1Q02388 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
COL7A1Q02388 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
COL7A1Q02388 HARS-201ENST00000307633 1780 ntTSL 2 BASIC12.52□□□□□ -0.41
COL7A1Q02388 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
COL7A1Q02388 AC126763.1-201ENST00000552015 2118 ntBASIC12.52□□□□□ -0.41
COL7A1Q02388 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
COL7A1Q02388 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC12.52□□□□□ -0.41
COL7A1Q02388 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
COL7A1Q02388 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
COL7A1Q02388 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC12.52□□□□□ -0.41
COL7A1Q02388 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC12.52□□□□□ -0.41
COL7A1Q02388 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC12.52□□□□□ -0.41
COL7A1Q02388 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC12.51□□□□□ -0.41
COL7A1Q02388 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
COL7A1Q02388 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
COL7A1Q02388 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC12.51□□□□□ -0.41
COL7A1Q02388 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC12.51□□□□□ -0.41
COL7A1Q02388 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC12.51□□□□□ -0.41
COL7A1Q02388 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC12.51□□□□□ -0.41
COL7A1Q02388 TSFM-210ENST00000550559 897 ntTSL 5 BASIC12.51□□□□□ -0.41
COL7A1Q02388 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
COL7A1Q02388 FLYWCH1P1-201ENST00000460917 1874 ntBASIC12.51□□□□□ -0.41
COL7A1Q02388 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC12.51□□□□□ -0.41
COL7A1Q02388 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
COL7A1Q02388 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC12.51□□□□□ -0.41
COL7A1Q02388 CYP51A1P2-201ENST00000419457 1499 ntBASIC12.51□□□□□ -0.41
COL7A1Q02388 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
COL7A1Q02388 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC12.51□□□□□ -0.41
COL7A1Q02388 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC12.51□□□□□ -0.41
COL7A1Q02388 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
COL7A1Q02388 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
COL7A1Q02388 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
COL7A1Q02388 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
COL7A1Q02388 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
COL7A1Q02388 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
COL7A1Q02388 CALY-202ENST00000368555 783 ntTSL 2 BASIC12.51□□□□□ -0.41
COL7A1Q02388 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC12.51□□□□□ -0.41
COL7A1Q02388 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC12.51□□□□□ -0.41
COL7A1Q02388 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
COL7A1Q02388 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
COL7A1Q02388 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
COL7A1Q02388 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC12.51□□□□□ -0.41
COL7A1Q02388 MIR6805-201ENST00000615055 62 ntBASIC12.51□□□□□ -0.41
COL7A1Q02388 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC12.51□□□□□ -0.41
COL7A1Q02388 ADM-207ENST00000530439 1839 ntTSL 2 BASIC12.51□□□□□ -0.41
COL7A1Q02388 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
COL7A1Q02388 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
COL7A1Q02388 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC12.51□□□□□ -0.41
COL7A1Q02388 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
COL7A1Q02388 CD81-202ENST00000381036 880 ntTSL 3 BASIC12.51□□□□□ -0.41
COL7A1Q02388 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC12.51□□□□□ -0.41
COL7A1Q02388 MACROD2-AS1-202ENST00000455291 663 ntTSL 2 BASIC12.51□□□□□ -0.41
COL7A1Q02388 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC12.51□□□□□ -0.41
COL7A1Q02388 STK25P1-201ENST00000585406 838 ntBASIC12.51□□□□□ -0.41
COL7A1Q02388 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
COL7A1Q02388 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC12.51□□□□□ -0.41
COL7A1Q02388 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC12.51□□□□□ -0.41
COL7A1Q02388 RAB34-224ENST00000636513 888 ntTSL 5 BASIC12.51□□□□□ -0.41
COL7A1Q02388 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
COL7A1Q02388 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
COL7A1Q02388 USP39-202ENST00000409025 1946 ntTSL 5 BASIC12.5□□□□□ -0.41
COL7A1Q02388 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
COL7A1Q02388 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
COL7A1Q02388 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
COL7A1Q02388 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
COL7A1Q02388 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
COL7A1Q02388 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
COL7A1Q02388 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
COL7A1Q02388 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
COL7A1Q02388 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
COL7A1Q02388 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
COL7A1Q02388 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC12.5□□□□□ -0.41
COL7A1Q02388 AC125807.1-201ENST00000483097 614 ntBASIC12.5□□□□□ -0.41
COL7A1Q02388 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC12.5□□□□□ -0.41
COL7A1Q02388 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC12.5□□□□□ -0.41
COL7A1Q02388 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC12.5□□□□□ -0.41
COL7A1Q02388 AC019129.2-201ENST00000609837 1235 ntBASIC12.5□□□□□ -0.41
COL7A1Q02388 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC12.5□□□□□ -0.41
COL7A1Q02388 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC12.5□□□□□ -0.41
COL7A1Q02388 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 55.2 ms