Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CLRN1P58418 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC15.82■□□□□ 0.12
CLRN1P58418 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CLRN1P58418 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
CLRN1P58418 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
CLRN1P58418 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CLRN1P58418 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC15.81■□□□□ 0.12
CLRN1P58418 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CLRN1P58418 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
CLRN1P58418 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CLRN1P58418 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
CLRN1P58418 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CLRN1P58418 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CLRN1P58418 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
CLRN1P58418 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CLRN1P58418 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC15.81■□□□□ 0.12
CLRN1P58418 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
CLRN1P58418 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
CLRN1P58418 AL031133.1-201ENST00000406807 723 ntBASIC15.81■□□□□ 0.12
CLRN1P58418 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC15.81■□□□□ 0.12
CLRN1P58418 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
CLRN1P58418 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC15.81■□□□□ 0.12
CLRN1P58418 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
CLRN1P58418 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC15.81■□□□□ 0.12
CLRN1P58418 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC15.81■□□□□ 0.12
CLRN1P58418 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC15.81■□□□□ 0.12
CLRN1P58418 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC15.81■□□□□ 0.12
CLRN1P58418 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
CLRN1P58418 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
CLRN1P58418 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
CLRN1P58418 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC15.8■□□□□ 0.12
CLRN1P58418 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CLRN1P58418 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
CLRN1P58418 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CLRN1P58418 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CLRN1P58418 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CLRN1P58418 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
CLRN1P58418 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
CLRN1P58418 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CLRN1P58418 BX276092.7-203ENST00000637198 1536 ntBASIC15.8■□□□□ 0.12
CLRN1P58418 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CLRN1P58418 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
CLRN1P58418 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC15.8■□□□□ 0.12
CLRN1P58418 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC15.8■□□□□ 0.12
CLRN1P58418 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC15.8■□□□□ 0.12
CLRN1P58418 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CLRN1P58418 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CLRN1P58418 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CLRN1P58418 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC15.8■□□□□ 0.12
CLRN1P58418 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
CLRN1P58418 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CLRN1P58418 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CLRN1P58418 IGHV3-41-201ENST00000613121 348 ntBASIC15.8■□□□□ 0.12
CLRN1P58418 AC124864.1-201ENST00000623408 392 ntBASIC15.8■□□□□ 0.12
CLRN1P58418 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC15.8■□□□□ 0.12
CLRN1P58418 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CLRN1P58418 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC15.8■□□□□ 0.12
CLRN1P58418 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC15.8■□□□□ 0.12
CLRN1P58418 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
CLRN1P58418 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC15.8■□□□□ 0.12
CLRN1P58418 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC15.8■□□□□ 0.12
CLRN1P58418 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
CLRN1P58418 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
CLRN1P58418 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
CLRN1P58418 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CLRN1P58418 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
CLRN1P58418 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CLRN1P58418 AC133963.1-201ENST00000504166 1679 ntBASIC15.79■□□□□ 0.12
CLRN1P58418 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CLRN1P58418 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CLRN1P58418 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
CLRN1P58418 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC15.79■□□□□ 0.12
CLRN1P58418 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC15.79■□□□□ 0.12
CLRN1P58418 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CLRN1P58418 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CLRN1P58418 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC15.79■□□□□ 0.12
CLRN1P58418 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC15.79■□□□□ 0.12
CLRN1P58418 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC15.79■□□□□ 0.12
CLRN1P58418 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC15.79■□□□□ 0.12
CLRN1P58418 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
CLRN1P58418 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
CLRN1P58418 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
CLRN1P58418 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC15.79■□□□□ 0.12
CLRN1P58418 KRT8P26-201ENST00000534154 1276 ntBASIC15.79■□□□□ 0.12
CLRN1P58418 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
CLRN1P58418 AC090616.6-201ENST00000582640 721 ntBASIC15.79■□□□□ 0.12
CLRN1P58418 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
CLRN1P58418 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC15.79■□□□□ 0.12
CLRN1P58418 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CLRN1P58418 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC15.79■□□□□ 0.12
CLRN1P58418 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CLRN1P58418 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
CLRN1P58418 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
CLRN1P58418 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
CLRN1P58418 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CLRN1P58418 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
CLRN1P58418 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
CLRN1P58418 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC15.79■□□□□ 0.12
CLRN1P58418 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC15.79■□□□□ 0.12
CLRN1P58418 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC15.79■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms