Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 FAM8A6P-201ENST00000407496 1135 ntBASIC17.11■□□□□ 0.33
FOXA1P55317 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC17.11■□□□□ 0.33
FOXA1P55317 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
FOXA1P55317 MTCL1P1-201ENST00000446207 792 ntBASIC17.11■□□□□ 0.33
FOXA1P55317 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC17.11■□□□□ 0.33
FOXA1P55317 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC17.11■□□□□ 0.33
FOXA1P55317 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC17.11■□□□□ 0.33
FOXA1P55317 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC17.11■□□□□ 0.33
FOXA1P55317 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC17.11■□□□□ 0.33
FOXA1P55317 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC17.11■□□□□ 0.33
FOXA1P55317 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
FOXA1P55317 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC17.11■□□□□ 0.33
FOXA1P55317 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
FOXA1P55317 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC17.11■□□□□ 0.33
FOXA1P55317 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
FOXA1P55317 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC17.11■□□□□ 0.33
FOXA1P55317 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC17.11■□□□□ 0.33
FOXA1P55317 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
FOXA1P55317 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC17.11■□□□□ 0.33
FOXA1P55317 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
FOXA1P55317 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
FOXA1P55317 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
FOXA1P55317 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
FOXA1P55317 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC17.1■□□□□ 0.33
FOXA1P55317 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
FOXA1P55317 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
FOXA1P55317 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
FOXA1P55317 AC060834.1-201ENST00000443027 2032 ntBASIC17.1■□□□□ 0.33
FOXA1P55317 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC17.1■□□□□ 0.33
FOXA1P55317 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
FOXA1P55317 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
FOXA1P55317 HBZP1-201ENST00000354915 429 ntBASIC17.1■□□□□ 0.33
FOXA1P55317 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC17.1■□□□□ 0.33
FOXA1P55317 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
FOXA1P55317 VENTXP5-201ENST00000523979 775 ntBASIC17.1■□□□□ 0.33
FOXA1P55317 ZNF444P1-201ENST00000559497 298 ntBASIC17.1■□□□□ 0.33
FOXA1P55317 P4HB-223ENST00000576390 439 ntTSL 4 BASIC17.1■□□□□ 0.33
FOXA1P55317 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC17.1■□□□□ 0.33
FOXA1P55317 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
FOXA1P55317 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
FOXA1P55317 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
FOXA1P55317 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
FOXA1P55317 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
FOXA1P55317 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
FOXA1P55317 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC17.1■□□□□ 0.33
FOXA1P55317 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
FOXA1P55317 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
FOXA1P55317 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
FOXA1P55317 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
FOXA1P55317 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC17.1■□□□□ 0.33
FOXA1P55317 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
FOXA1P55317 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
FOXA1P55317 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
FOXA1P55317 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC17.09■□□□□ 0.33
FOXA1P55317 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC17.09■□□□□ 0.33
FOXA1P55317 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
FOXA1P55317 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
FOXA1P55317 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
FOXA1P55317 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC17.09■□□□□ 0.33
FOXA1P55317 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC17.09■□□□□ 0.33
FOXA1P55317 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
FOXA1P55317 AC005521.1-201ENST00000393351 872 ntBASIC17.09■□□□□ 0.33
FOXA1P55317 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC17.09■□□□□ 0.33
FOXA1P55317 KRT18P57-201ENST00000443599 1254 ntBASIC17.09■□□□□ 0.33
FOXA1P55317 AL359075.1-203ENST00000462729 1002 ntBASIC17.09■□□□□ 0.33
FOXA1P55317 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC17.09■□□□□ 0.33
FOXA1P55317 TK2-213ENST00000563369 882 ntTSL 5 BASIC17.09■□□□□ 0.33
FOXA1P55317 SPEG-225ENST00000617028 815 ntTSL 5 BASIC17.09■□□□□ 0.33
FOXA1P55317 HYMAI.1-201ENST00000620949 238 ntBASIC17.09■□□□□ 0.33
FOXA1P55317 DFFB-212ENST00000625756 649 ntTSL 5 BASIC17.09■□□□□ 0.33
FOXA1P55317 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
FOXA1P55317 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
FOXA1P55317 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC17.09■□□□□ 0.33
FOXA1P55317 ADM-208ENST00000534464 1640 ntTSL 2 BASIC17.09■□□□□ 0.33
FOXA1P55317 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC17.09■□□□□ 0.33
FOXA1P55317 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC17.09■□□□□ 0.33
FOXA1P55317 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC17.09■□□□□ 0.33
FOXA1P55317 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
FOXA1P55317 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
FOXA1P55317 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
FOXA1P55317 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
FOXA1P55317 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC17.09■□□□□ 0.33
FOXA1P55317 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC17.09■□□□□ 0.33
FOXA1P55317 AC106886.4-201ENST00000623557 2502 ntBASIC17.09■□□□□ 0.33
FOXA1P55317 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
FOXA1P55317 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
FOXA1P55317 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC17.09■□□□□ 0.33
FOXA1P55317 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
FOXA1P55317 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC17.09■□□□□ 0.33
FOXA1P55317 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
FOXA1P55317 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
FOXA1P55317 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
FOXA1P55317 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC17.08■□□□□ 0.33
FOXA1P55317 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
FOXA1P55317 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
FOXA1P55317 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
FOXA1P55317 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
FOXA1P55317 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
FOXA1P55317 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC17.08■□□□□ 0.33
FOXA1P55317 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC17.08■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms