Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 KRT8P26-201ENST00000534154 1276 ntBASIC18.4■□□□□ 0.54
CDH6P55285 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC18.4■□□□□ 0.54
CDH6P55285 DBP-204ENST00000599385 709 ntTSL 3 BASIC18.4■□□□□ 0.54
CDH6P55285 IGHV3-41-201ENST00000613121 348 ntBASIC18.4■□□□□ 0.54
CDH6P55285 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
CDH6P55285 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
CDH6P55285 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC18.4■□□□□ 0.54
CDH6P55285 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC18.4■□□□□ 0.54
CDH6P55285 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC18.4■□□□□ 0.54
CDH6P55285 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CDH6P55285 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC18.4■□□□□ 0.54
CDH6P55285 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CDH6P55285 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CDH6P55285 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
CDH6P55285 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CDH6P55285 BOC-212ENST00000485230 2173 ntTSL 2 BASIC18.4■□□□□ 0.54
CDH6P55285 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.54
CDH6P55285 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC18.39■□□□□ 0.54
CDH6P55285 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.54
CDH6P55285 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.54
CDH6P55285 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
CDH6P55285 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
CDH6P55285 TBC1D3P5-201ENST00000579401 1545 ntBASIC18.39■□□□□ 0.54
CDH6P55285 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CDH6P55285 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC18.39■□□□□ 0.53
CDH6P55285 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC18.39■□□□□ 0.53
CDH6P55285 ADM-208ENST00000534464 1640 ntTSL 2 BASIC18.39■□□□□ 0.53
CDH6P55285 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC18.39■□□□□ 0.53
CDH6P55285 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CDH6P55285 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC18.39■□□□□ 0.53
CDH6P55285 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CDH6P55285 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
CDH6P55285 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CDH6P55285 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC18.39■□□□□ 0.53
CDH6P55285 AC096633.1-201ENST00000422446 749 ntBASIC18.39■□□□□ 0.53
CDH6P55285 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CDH6P55285 CNP-204ENST00000472031 1019 ntTSL 2 BASIC18.39■□□□□ 0.53
CDH6P55285 KRT18P35-201ENST00000510488 1269 ntBASIC18.39■□□□□ 0.53
CDH6P55285 PTK2-216ENST00000519881 863 ntTSL 3 BASIC18.39■□□□□ 0.53
CDH6P55285 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CDH6P55285 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC18.39■□□□□ 0.53
CDH6P55285 AC090616.6-201ENST00000582640 721 ntBASIC18.39■□□□□ 0.53
CDH6P55285 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC18.39■□□□□ 0.53
CDH6P55285 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC18.39■□□□□ 0.53
CDH6P55285 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CDH6P55285 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CDH6P55285 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC18.39■□□□□ 0.53
CDH6P55285 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CDH6P55285 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CDH6P55285 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CDH6P55285 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
CDH6P55285 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC18.39■□□□□ 0.53
CDH6P55285 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
CDH6P55285 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
CDH6P55285 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
CDH6P55285 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC18.38■□□□□ 0.53
CDH6P55285 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC18.38■□□□□ 0.53
CDH6P55285 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC18.38■□□□□ 0.53
CDH6P55285 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CDH6P55285 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CDH6P55285 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CDH6P55285 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC18.38■□□□□ 0.53
CDH6P55285 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
CDH6P55285 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
CDH6P55285 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CDH6P55285 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CDH6P55285 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CDH6P55285 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CDH6P55285 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CDH6P55285 ISCU-203ENST00000431221 799 ntTSL 2 BASIC18.38■□□□□ 0.53
CDH6P55285 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CDH6P55285 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CDH6P55285 AL445228.2-201ENST00000605589 952 ntBASIC18.38■□□□□ 0.53
CDH6P55285 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC18.38■□□□□ 0.53
CDH6P55285 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC18.38■□□□□ 0.53
CDH6P55285 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CDH6P55285 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC18.38■□□□□ 0.53
CDH6P55285 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC18.38■□□□□ 0.53
CDH6P55285 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
CDH6P55285 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CDH6P55285 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC18.38■□□□□ 0.53
CDH6P55285 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CDH6P55285 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CDH6P55285 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CDH6P55285 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC18.38■□□□□ 0.53
CDH6P55285 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CDH6P55285 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CDH6P55285 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC18.38■□□□□ 0.53
CDH6P55285 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CDH6P55285 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC18.37■□□□□ 0.53
CDH6P55285 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CDH6P55285 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CDH6P55285 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CDH6P55285 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC18.37■□□□□ 0.53
CDH6P55285 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
CDH6P55285 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC18.37■□□□□ 0.53
CDH6P55285 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CDH6P55285 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CDH6P55285 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CDH6P55285 BANP-227ENST00000626016 2144 ntTSL 2 BASIC18.37■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms