Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
COL4A4P53420 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL4A4P53420 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
COL4A4P53420 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL4A4P53420 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC18.75■□□□□ 0.59
COL4A4P53420 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC18.75■□□□□ 0.59
COL4A4P53420 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC18.75■□□□□ 0.59
COL4A4P53420 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC18.75■□□□□ 0.59
COL4A4P53420 PUDP-206ENST00000540122 825 ntTSL 2 BASIC18.75■□□□□ 0.59
COL4A4P53420 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
COL4A4P53420 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL4A4P53420 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL4A4P53420 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL4A4P53420 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC18.75■□□□□ 0.59
COL4A4P53420 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL4A4P53420 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
COL4A4P53420 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL4A4P53420 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
COL4A4P53420 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL4A4P53420 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
COL4A4P53420 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
COL4A4P53420 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL4A4P53420 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL4A4P53420 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL4A4P53420 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC18.74■□□□□ 0.59
COL4A4P53420 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC18.74■□□□□ 0.59
COL4A4P53420 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL4A4P53420 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC18.74■□□□□ 0.59
COL4A4P53420 COPE-202ENST00000349893 948 ntTSL 2 BASIC18.74■□□□□ 0.59
COL4A4P53420 AC092474.2-201ENST00000424288 719 ntBASIC18.74■□□□□ 0.59
COL4A4P53420 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC18.74■□□□□ 0.59
COL4A4P53420 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC18.74■□□□□ 0.59
COL4A4P53420 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL4A4P53420 SMN2-210ENST00000511812 867 ntTSL 2 BASIC18.74■□□□□ 0.59
COL4A4P53420 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC18.74■□□□□ 0.59
COL4A4P53420 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC18.74■□□□□ 0.59
COL4A4P53420 AL390955.2-201ENST00000603032 514 ntBASIC18.74■□□□□ 0.59
COL4A4P53420 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
COL4A4P53420 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC18.74■□□□□ 0.59
COL4A4P53420 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL4A4P53420 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC18.74■□□□□ 0.59
COL4A4P53420 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC18.74■□□□□ 0.59
COL4A4P53420 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
COL4A4P53420 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
COL4A4P53420 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
COL4A4P53420 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL4A4P53420 SIRPAP1-201ENST00000448467 1770 ntBASIC18.74■□□□□ 0.59
COL4A4P53420 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
COL4A4P53420 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
COL4A4P53420 TBC1D3P5-201ENST00000579401 1545 ntBASIC18.74■□□□□ 0.59
COL4A4P53420 FUT8-AS1-201ENST00000621019 1521 ntBASIC18.74■□□□□ 0.59
COL4A4P53420 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC18.74■□□□□ 0.59
COL4A4P53420 AC138028.4-201ENST00000564984 1845 ntBASIC18.74■□□□□ 0.59
COL4A4P53420 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL4A4P53420 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL4A4P53420 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC18.73■□□□□ 0.59
COL4A4P53420 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
COL4A4P53420 FAM86GP-201ENST00000448322 971 ntBASIC18.73■□□□□ 0.59
COL4A4P53420 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC18.73■□□□□ 0.59
COL4A4P53420 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC18.73■□□□□ 0.59
COL4A4P53420 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC18.73■□□□□ 0.59
COL4A4P53420 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL4A4P53420 AC100803.2-201ENST00000562459 1963 ntBASIC18.73■□□□□ 0.59
COL4A4P53420 COMP-202ENST00000425807 2292 ntTSL 2 BASIC18.73■□□□□ 0.59
COL4A4P53420 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC18.73■□□□□ 0.59
COL4A4P53420 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL4A4P53420 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
COL4A4P53420 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL4A4P53420 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
COL4A4P53420 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL4A4P53420 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL4A4P53420 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC18.73■□□□□ 0.59
COL4A4P53420 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
COL4A4P53420 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
COL4A4P53420 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
COL4A4P53420 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
COL4A4P53420 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
COL4A4P53420 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC18.73■□□□□ 0.59
COL4A4P53420 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC18.73■□□□□ 0.59
COL4A4P53420 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC18.73■□□□□ 0.59
COL4A4P53420 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC18.73■□□□□ 0.59
COL4A4P53420 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC18.73■□□□□ 0.59
COL4A4P53420 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC18.73■□□□□ 0.59
COL4A4P53420 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC18.73■□□□□ 0.59
COL4A4P53420 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL4A4P53420 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC18.72■□□□□ 0.59
COL4A4P53420 AC132938.5-201ENST00000624980 1813 ntBASIC18.72■□□□□ 0.59
COL4A4P53420 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL4A4P53420 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
COL4A4P53420 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC18.72■□□□□ 0.59
COL4A4P53420 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL4A4P53420 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC18.72■□□□□ 0.59
COL4A4P53420 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
COL4A4P53420 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL4A4P53420 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
COL4A4P53420 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC18.72■□□□□ 0.59
COL4A4P53420 AC087641.1-201ENST00000557561 1021 ntBASIC18.72■□□□□ 0.59
COL4A4P53420 AC004449.1-201ENST00000564240 433 ntBASIC18.72■□□□□ 0.59
COL4A4P53420 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC18.72■□□□□ 0.59
COL4A4P53420 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC18.72■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms