Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
NEK3P51956 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC18.24■□□□□ 0.51
NEK3P51956 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC18.24■□□□□ 0.51
NEK3P51956 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
NEK3P51956 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
NEK3P51956 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
NEK3P51956 LINC01126-201ENST00000623515 1646 ntBASIC18.23■□□□□ 0.51
NEK3P51956 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
NEK3P51956 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
NEK3P51956 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
NEK3P51956 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
NEK3P51956 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
NEK3P51956 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
NEK3P51956 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
NEK3P51956 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
NEK3P51956 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC18.23■□□□□ 0.51
NEK3P51956 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
NEK3P51956 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
NEK3P51956 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
NEK3P51956 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
NEK3P51956 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
NEK3P51956 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
NEK3P51956 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC18.23■□□□□ 0.51
NEK3P51956 TSPY12P-201ENST00000421279 868 ntBASIC18.23■□□□□ 0.51
NEK3P51956 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC18.23■□□□□ 0.51
NEK3P51956 AC074051.2-201ENST00000565115 352 ntBASIC18.23■□□□□ 0.51
NEK3P51956 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC18.23■□□□□ 0.51
NEK3P51956 AC011840.4-201ENST00000578471 627 ntBASIC18.23■□□□□ 0.51
NEK3P51956 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC18.23■□□□□ 0.51
NEK3P51956 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC18.23■□□□□ 0.51
NEK3P51956 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
NEK3P51956 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
NEK3P51956 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
NEK3P51956 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC18.23■□□□□ 0.51
NEK3P51956 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
NEK3P51956 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
NEK3P51956 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC18.23■□□□□ 0.51
NEK3P51956 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC18.23■□□□□ 0.51
NEK3P51956 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
NEK3P51956 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
NEK3P51956 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC18.22■□□□□ 0.51
NEK3P51956 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
NEK3P51956 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
NEK3P51956 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
NEK3P51956 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
NEK3P51956 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
NEK3P51956 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
NEK3P51956 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC18.22■□□□□ 0.51
NEK3P51956 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
NEK3P51956 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
NEK3P51956 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
NEK3P51956 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
NEK3P51956 SP100-208ENST00000427101 1922 ntTSL 2 BASIC18.22■□□□□ 0.51
NEK3P51956 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC18.22■□□□□ 0.51
NEK3P51956 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC18.22■□□□□ 0.51
NEK3P51956 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC18.22■□□□□ 0.51
NEK3P51956 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
NEK3P51956 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
NEK3P51956 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
NEK3P51956 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC18.22■□□□□ 0.51
NEK3P51956 AC246785.2-201ENST00000432512 513 ntBASIC18.22■□□□□ 0.51
NEK3P51956 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC18.22■□□□□ 0.51
NEK3P51956 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC18.22■□□□□ 0.51
NEK3P51956 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC18.22■□□□□ 0.51
NEK3P51956 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
NEK3P51956 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC18.22■□□□□ 0.51
NEK3P51956 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC18.22■□□□□ 0.51
NEK3P51956 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC18.22■□□□□ 0.51
NEK3P51956 KRT18P55-202ENST00000578578 1546 ntBASIC18.22■□□□□ 0.51
NEK3P51956 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
NEK3P51956 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
NEK3P51956 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
NEK3P51956 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC18.22■□□□□ 0.51
NEK3P51956 LINC00167-201ENST00000530583 1419 ntBASIC18.22■□□□□ 0.51
NEK3P51956 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
NEK3P51956 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC18.22■□□□□ 0.51
NEK3P51956 BANP-227ENST00000626016 2144 ntTSL 2 BASIC18.22■□□□□ 0.51
NEK3P51956 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC18.22■□□□□ 0.51
NEK3P51956 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
NEK3P51956 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
NEK3P51956 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
NEK3P51956 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC18.21■□□□□ 0.51
NEK3P51956 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
NEK3P51956 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC18.21■□□□□ 0.51
NEK3P51956 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
NEK3P51956 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC18.21■□□□□ 0.51
NEK3P51956 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
NEK3P51956 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
NEK3P51956 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
NEK3P51956 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC18.21■□□□□ 0.51
NEK3P51956 KRT17P6-201ENST00000453795 1220 ntBASIC18.21■□□□□ 0.51
NEK3P51956 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC18.21■□□□□ 0.51
NEK3P51956 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC18.21■□□□□ 0.51
NEK3P51956 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
NEK3P51956 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC18.21■□□□□ 0.51
NEK3P51956 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC18.21■□□□□ 0.51
NEK3P51956 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
NEK3P51956 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC18.21■□□□□ 0.51
NEK3P51956 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
NEK3P51956 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms