Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC18.35■□□□□ 0.53
PTPN9P43378 PP12613-201ENST00000424958 2230 ntBASIC18.35■□□□□ 0.53
PTPN9P43378 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
PTPN9P43378 AMT-250ENST00000637682 1823 ntTSL 5 BASIC18.35■□□□□ 0.53
PTPN9P43378 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
PTPN9P43378 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
PTPN9P43378 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
PTPN9P43378 AL353593.2-201ENST00000602529 1483 ntBASIC18.35■□□□□ 0.53
PTPN9P43378 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
PTPN9P43378 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
PTPN9P43378 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
PTPN9P43378 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
PTPN9P43378 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC18.35■□□□□ 0.53
PTPN9P43378 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC18.35■□□□□ 0.53
PTPN9P43378 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC18.35■□□□□ 0.53
PTPN9P43378 AC099336.1-202ENST00000602961 463 ntBASIC18.35■□□□□ 0.53
PTPN9P43378 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC18.35■□□□□ 0.53
PTPN9P43378 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
PTPN9P43378 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC18.35■□□□□ 0.53
PTPN9P43378 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
PTPN9P43378 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
PTPN9P43378 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
PTPN9P43378 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
PTPN9P43378 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC18.35■□□□□ 0.53
PTPN9P43378 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
PTPN9P43378 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC18.35■□□□□ 0.53
PTPN9P43378 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC18.35■□□□□ 0.53
PTPN9P43378 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
PTPN9P43378 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC18.34■□□□□ 0.53
PTPN9P43378 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
PTPN9P43378 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
PTPN9P43378 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PTPN9P43378 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
PTPN9P43378 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PTPN9P43378 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PTPN9P43378 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PTPN9P43378 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
PTPN9P43378 HCG4P8-203ENST00000443049 980 ntBASIC18.34■□□□□ 0.53
PTPN9P43378 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC18.34■□□□□ 0.53
PTPN9P43378 AC111152.3-201ENST00000569699 673 ntBASIC18.34■□□□□ 0.53
PTPN9P43378 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC18.34■□□□□ 0.53
PTPN9P43378 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC18.34■□□□□ 0.53
PTPN9P43378 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
PTPN9P43378 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC18.34■□□□□ 0.53
PTPN9P43378 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
PTPN9P43378 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
PTPN9P43378 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
PTPN9P43378 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
PTPN9P43378 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC18.34■□□□□ 0.53
PTPN9P43378 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PTPN9P43378 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
PTPN9P43378 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
PTPN9P43378 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC18.34■□□□□ 0.53
PTPN9P43378 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.53
PTPN9P43378 TPR-209ENST00000613151 2478 ntTSL 5 BASIC18.33■□□□□ 0.53
PTPN9P43378 KRT8P10-201ENST00000450021 1447 ntBASIC18.33■□□□□ 0.53
PTPN9P43378 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
PTPN9P43378 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC18.33■□□□□ 0.53
PTPN9P43378 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
PTPN9P43378 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
PTPN9P43378 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC18.33■□□□□ 0.53
PTPN9P43378 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
PTPN9P43378 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC18.33■□□□□ 0.53
PTPN9P43378 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
PTPN9P43378 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
PTPN9P43378 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC18.33■□□□□ 0.52
PTPN9P43378 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
PTPN9P43378 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
PTPN9P43378 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC18.33■□□□□ 0.52
PTPN9P43378 NMU-205ENST00000511469 756 ntTSL 3 BASIC18.33■□□□□ 0.52
PTPN9P43378 FICD-205ENST00000552758 603 ntTSL 2 BASIC18.33■□□□□ 0.52
PTPN9P43378 PNN-202ENST00000553331 656 ntTSL 3 BASIC18.33■□□□□ 0.52
PTPN9P43378 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC18.33■□□□□ 0.52
PTPN9P43378 AD001527.2-201ENST00000622994 785 ntBASIC18.33■□□□□ 0.52
PTPN9P43378 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
PTPN9P43378 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC18.33■□□□□ 0.52
PTPN9P43378 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
PTPN9P43378 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
PTPN9P43378 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
PTPN9P43378 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
PTPN9P43378 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC18.32■□□□□ 0.52
PTPN9P43378 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC18.32■□□□□ 0.52
PTPN9P43378 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
PTPN9P43378 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PTPN9P43378 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
PTPN9P43378 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
PTPN9P43378 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
PTPN9P43378 HCG11-201ENST00000411553 5696 ntBASIC18.32■□□□□ 0.52
PTPN9P43378 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC18.32■□□□□ 0.52
PTPN9P43378 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
PTPN9P43378 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC18.32■□□□□ 0.52
PTPN9P43378 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
PTPN9P43378 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PTPN9P43378 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
PTPN9P43378 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
PTPN9P43378 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
PTPN9P43378 STK25P1-201ENST00000585406 838 ntBASIC18.32■□□□□ 0.52
PTPN9P43378 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC18.32■□□□□ 0.52
PTPN9P43378 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC18.32■□□□□ 0.52
PTPN9P43378 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms