Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
BDNFP23560 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
BDNFP23560 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
BDNFP23560 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
BDNFP23560 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
BDNFP23560 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC18.62■□□□□ 0.57
BDNFP23560 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC18.62■□□□□ 0.57
BDNFP23560 AC007613.1-201ENST00000572811 2597 ntBASIC18.62■□□□□ 0.57
BDNFP23560 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
BDNFP23560 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
BDNFP23560 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC18.62■□□□□ 0.57
BDNFP23560 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
BDNFP23560 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
BDNFP23560 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC18.62■□□□□ 0.57
BDNFP23560 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
BDNFP23560 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC18.62■□□□□ 0.57
BDNFP23560 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC18.62■□□□□ 0.57
BDNFP23560 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
BDNFP23560 AL031284.1-201ENST00000419297 478 ntBASIC18.62■□□□□ 0.57
BDNFP23560 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC18.62■□□□□ 0.57
BDNFP23560 HNRNPDP1-201ENST00000439535 754 ntBASIC18.62■□□□□ 0.57
BDNFP23560 BX005266.1-201ENST00000473402 457 ntBASIC18.62■□□□□ 0.57
BDNFP23560 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
BDNFP23560 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC18.62■□□□□ 0.57
BDNFP23560 COX5A-202ENST00000562233 441 ntTSL 3 BASIC18.62■□□□□ 0.57
BDNFP23560 AP001005.1-201ENST00000571755 1248 ntBASIC18.62■□□□□ 0.57
BDNFP23560 AL139288.1-201ENST00000623748 933 ntBASIC18.62■□□□□ 0.57
BDNFP23560 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC18.62■□□□□ 0.57
BDNFP23560 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC18.62■□□□□ 0.57
BDNFP23560 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
BDNFP23560 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
BDNFP23560 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
BDNFP23560 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC18.62■□□□□ 0.57
BDNFP23560 AC079776.2-201ENST00000641154 1609 ntBASIC18.62■□□□□ 0.57
BDNFP23560 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC18.62■□□□□ 0.57
BDNFP23560 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC18.62■□□□□ 0.57
BDNFP23560 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
BDNFP23560 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
BDNFP23560 AC004817.3-201ENST00000602957 2129 ntBASIC18.62■□□□□ 0.57
BDNFP23560 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC18.62■□□□□ 0.57
BDNFP23560 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
BDNFP23560 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
BDNFP23560 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
BDNFP23560 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
BDNFP23560 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
BDNFP23560 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC18.61■□□□□ 0.57
BDNFP23560 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC18.61■□□□□ 0.57
BDNFP23560 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC18.61■□□□□ 0.57
BDNFP23560 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
BDNFP23560 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
BDNFP23560 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
BDNFP23560 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC18.61■□□□□ 0.57
BDNFP23560 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
BDNFP23560 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
BDNFP23560 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
BDNFP23560 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC18.61■□□□□ 0.57
BDNFP23560 AL353593.2-201ENST00000602529 1483 ntBASIC18.61■□□□□ 0.57
BDNFP23560 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC18.61■□□□□ 0.57
BDNFP23560 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
BDNFP23560 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
BDNFP23560 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC18.61■□□□□ 0.57
BDNFP23560 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
BDNFP23560 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
BDNFP23560 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
BDNFP23560 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC18.61■□□□□ 0.57
BDNFP23560 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
BDNFP23560 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
BDNFP23560 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC18.61■□□□□ 0.57
BDNFP23560 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
BDNFP23560 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
BDNFP23560 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
BDNFP23560 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
BDNFP23560 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
BDNFP23560 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC18.6■□□□□ 0.57
BDNFP23560 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC18.6■□□□□ 0.57
BDNFP23560 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
BDNFP23560 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
BDNFP23560 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
BDNFP23560 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
BDNFP23560 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
BDNFP23560 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
BDNFP23560 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
BDNFP23560 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
BDNFP23560 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
BDNFP23560 RPS2P1-201ENST00000434010 821 ntBASIC18.6■□□□□ 0.57
BDNFP23560 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC18.6■□□□□ 0.57
BDNFP23560 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
BDNFP23560 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC18.6■□□□□ 0.57
BDNFP23560 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
BDNFP23560 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
BDNFP23560 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC18.6■□□□□ 0.57
BDNFP23560 AC132938.5-201ENST00000624980 1813 ntBASIC18.6■□□□□ 0.57
BDNFP23560 HARS-201ENST00000307633 1780 ntTSL 2 BASIC18.6■□□□□ 0.57
BDNFP23560 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC18.6■□□□□ 0.57
BDNFP23560 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC18.6■□□□□ 0.57
BDNFP23560 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC18.59■□□□□ 0.57
BDNFP23560 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
BDNFP23560 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
BDNFP23560 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
BDNFP23560 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC18.59■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms