Protein–RNA interactions for Protein: P22223

CDH3, Cadherin-3, humanhuman

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3P22223 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.37
CDH3P22223 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
CDH3P22223 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC17.33■□□□□ 0.37
CDH3P22223 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CDH3P22223 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CDH3P22223 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC17.33■□□□□ 0.37
CDH3P22223 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CDH3P22223 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CDH3P22223 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC17.33■□□□□ 0.37
CDH3P22223 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CDH3P22223 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
CDH3P22223 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC17.33■□□□□ 0.37
CDH3P22223 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CDH3P22223 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC17.33■□□□□ 0.36
CDH3P22223 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CDH3P22223 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
CDH3P22223 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CDH3P22223 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
CDH3P22223 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CDH3P22223 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
CDH3P22223 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CDH3P22223 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
CDH3P22223 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
CDH3P22223 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CDH3P22223 MTCL1P1-201ENST00000446207 792 ntBASIC17.33■□□□□ 0.36
CDH3P22223 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CDH3P22223 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC17.33■□□□□ 0.36
CDH3P22223 AC091304.2-201ENST00000564639 760 ntBASIC17.33■□□□□ 0.36
CDH3P22223 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC17.33■□□□□ 0.36
CDH3P22223 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC17.33■□□□□ 0.36
CDH3P22223 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CDH3P22223 AL121894.2-201ENST00000602977 491 ntBASIC17.33■□□□□ 0.36
CDH3P22223 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CDH3P22223 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CDH3P22223 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
CDH3P22223 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CDH3P22223 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC17.33■□□□□ 0.36
CDH3P22223 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
CDH3P22223 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC17.33■□□□□ 0.36
CDH3P22223 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC17.33■□□□□ 0.36
CDH3P22223 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
CDH3P22223 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
CDH3P22223 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
CDH3P22223 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CDH3P22223 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CDH3P22223 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CDH3P22223 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
CDH3P22223 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
CDH3P22223 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CDH3P22223 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CDH3P22223 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CDH3P22223 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CDH3P22223 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CDH3P22223 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
CDH3P22223 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
CDH3P22223 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CDH3P22223 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CDH3P22223 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CDH3P22223 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC17.32■□□□□ 0.36
CDH3P22223 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC17.32■□□□□ 0.36
CDH3P22223 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC17.32■□□□□ 0.36
CDH3P22223 TPM4P1-201ENST00000436100 807 ntBASIC17.32■□□□□ 0.36
CDH3P22223 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC17.32■□□□□ 0.36
CDH3P22223 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC17.32■□□□□ 0.36
CDH3P22223 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC17.32■□□□□ 0.36
CDH3P22223 AL732292.2-201ENST00000609649 430 ntBASIC17.32■□□□□ 0.36
CDH3P22223 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CDH3P22223 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC17.32■□□□□ 0.36
CDH3P22223 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CDH3P22223 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CDH3P22223 PHGDH-209ENST00000641074 1780 ntBASIC17.32■□□□□ 0.36
CDH3P22223 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC17.32■□□□□ 0.36
CDH3P22223 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
CDH3P22223 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC17.32■□□□□ 0.36
CDH3P22223 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CDH3P22223 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CDH3P22223 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CDH3P22223 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CDH3P22223 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
CDH3P22223 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
CDH3P22223 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CDH3P22223 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC17.31■□□□□ 0.36
CDH3P22223 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC17.31■□□□□ 0.36
CDH3P22223 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC17.31■□□□□ 0.36
CDH3P22223 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CDH3P22223 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CDH3P22223 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
CDH3P22223 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CDH3P22223 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CDH3P22223 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
CDH3P22223 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CDH3P22223 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CDH3P22223 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CDH3P22223 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CDH3P22223 NUS1P2-201ENST00000417358 873 ntBASIC17.31■□□□□ 0.36
CDH3P22223 TSPY19P-201ENST00000418461 509 ntBASIC17.31■□□□□ 0.36
CDH3P22223 TSPY18P-201ENST00000441642 509 ntBASIC17.31■□□□□ 0.36
CDH3P22223 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC17.31■□□□□ 0.36
CDH3P22223 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CDH3P22223 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC17.31■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms