Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC18.06■□□□□ 0.48
COL9A1P20849 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL9A1P20849 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC18.06■□□□□ 0.48
COL9A1P20849 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
COL9A1P20849 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
COL9A1P20849 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC18.06■□□□□ 0.48
COL9A1P20849 RPF1-202ENST00000370656 724 ntTSL 2 BASIC18.06■□□□□ 0.48
COL9A1P20849 MIR658-201ENST00000385210 100 ntBASIC18.06■□□□□ 0.48
COL9A1P20849 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
COL9A1P20849 AC107890.1-201ENST00000422478 521 ntBASIC18.06■□□□□ 0.48
COL9A1P20849 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL9A1P20849 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
COL9A1P20849 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC18.06■□□□□ 0.48
COL9A1P20849 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC18.06■□□□□ 0.48
COL9A1P20849 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
COL9A1P20849 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC18.06■□□□□ 0.48
COL9A1P20849 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC18.06■□□□□ 0.48
COL9A1P20849 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
COL9A1P20849 COX5A-202ENST00000562233 441 ntTSL 3 BASIC18.06■□□□□ 0.48
COL9A1P20849 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC18.06■□□□□ 0.48
COL9A1P20849 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC18.06■□□□□ 0.48
COL9A1P20849 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC18.06■□□□□ 0.48
COL9A1P20849 AC003101.2-201ENST00000612557 442 ntBASIC18.06■□□□□ 0.48
COL9A1P20849 REXO1L3P-201ENST00000622202 1288 ntBASIC18.06■□□□□ 0.48
COL9A1P20849 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC18.06■□□□□ 0.48
COL9A1P20849 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
COL9A1P20849 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC18.06■□□□□ 0.48
COL9A1P20849 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
COL9A1P20849 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL9A1P20849 RN7SL832P-201ENST00000607781 1756 ntBASIC18.06■□□□□ 0.48
COL9A1P20849 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL9A1P20849 ESPNP-201ENST00000270691 2015 ntBASIC18.06■□□□□ 0.48
COL9A1P20849 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL9A1P20849 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
COL9A1P20849 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL9A1P20849 AC126763.1-201ENST00000552015 2118 ntBASIC18.05■□□□□ 0.48
COL9A1P20849 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC18.05■□□□□ 0.48
COL9A1P20849 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL9A1P20849 AC129492.6-201ENST00000611383 1305 ntBASIC18.05■□□□□ 0.48
COL9A1P20849 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL9A1P20849 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL9A1P20849 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC18.05■□□□□ 0.48
COL9A1P20849 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
COL9A1P20849 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL9A1P20849 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL9A1P20849 POLD4-201ENST00000312419 918 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL9A1P20849 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC18.05■□□□□ 0.48
COL9A1P20849 AC007967.3-201ENST00000434308 558 ntBASIC18.05■□□□□ 0.48
COL9A1P20849 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC18.05■□□□□ 0.48
COL9A1P20849 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC18.05■□□□□ 0.48
COL9A1P20849 MTND2P7-201ENST00000521337 640 ntBASIC18.05■□□□□ 0.48
COL9A1P20849 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
COL9A1P20849 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC18.05■□□□□ 0.48
COL9A1P20849 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC18.05■□□□□ 0.48
COL9A1P20849 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC18.05■□□□□ 0.48
COL9A1P20849 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC18.05■□□□□ 0.48
COL9A1P20849 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL9A1P20849 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL9A1P20849 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL9A1P20849 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC18.05■□□□□ 0.48
COL9A1P20849 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC18.05■□□□□ 0.48
COL9A1P20849 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC18.05■□□□□ 0.48
COL9A1P20849 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC18.05■□□□□ 0.48
COL9A1P20849 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
COL9A1P20849 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
COL9A1P20849 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL9A1P20849 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC18.04■□□□□ 0.48
COL9A1P20849 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL9A1P20849 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
COL9A1P20849 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC18.04■□□□□ 0.48
COL9A1P20849 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
COL9A1P20849 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC18.04■□□□□ 0.48
COL9A1P20849 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
COL9A1P20849 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL9A1P20849 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL9A1P20849 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC18.04■□□□□ 0.48
COL9A1P20849 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL9A1P20849 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC18.04■□□□□ 0.48
COL9A1P20849 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
COL9A1P20849 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
COL9A1P20849 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL9A1P20849 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
COL9A1P20849 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
COL9A1P20849 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
COL9A1P20849 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
COL9A1P20849 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
COL9A1P20849 CTNS-203ENST00000399306 803 ntTSL 3 BASIC18.04■□□□□ 0.48
COL9A1P20849 AL627223.1-201ENST00000416693 442 ntBASIC18.04■□□□□ 0.48
COL9A1P20849 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL9A1P20849 TREML5P-201ENST00000421694 576 ntBASIC18.04■□□□□ 0.48
COL9A1P20849 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC18.04■□□□□ 0.48
COL9A1P20849 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
COL9A1P20849 ACA64.2-201ENST00000459014 129 ntBASIC18.04■□□□□ 0.48
COL9A1P20849 AC090142.2-201ENST00000483263 416 ntBASIC18.04■□□□□ 0.48
COL9A1P20849 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC18.04■□□□□ 0.48
COL9A1P20849 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC18.04■□□□□ 0.48
COL9A1P20849 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC18.04■□□□□ 0.48
COL9A1P20849 ZFR2-208ENST00000592398 532 ntTSL 5 BASIC18.04■□□□□ 0.48
COL9A1P20849 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC18.04■□□□□ 0.48
COL9A1P20849 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 61.3 ms