Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC18.22■□□□□ 0.51
COL6A3P12111 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
COL6A3P12111 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL6A3P12111 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC18.22■□□□□ 0.51
COL6A3P12111 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
COL6A3P12111 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
COL6A3P12111 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL6A3P12111 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC18.22■□□□□ 0.51
COL6A3P12111 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC18.22■□□□□ 0.51
COL6A3P12111 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC18.22■□□□□ 0.51
COL6A3P12111 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
COL6A3P12111 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC18.21■□□□□ 0.51
COL6A3P12111 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
COL6A3P12111 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC18.21■□□□□ 0.51
COL6A3P12111 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
COL6A3P12111 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL6A3P12111 AL021578.1-201ENST00000613646 709 ntBASIC18.21■□□□□ 0.51
COL6A3P12111 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC18.21■□□□□ 0.51
COL6A3P12111 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL6A3P12111 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL6A3P12111 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
COL6A3P12111 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC18.21■□□□□ 0.51
COL6A3P12111 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL6A3P12111 TUBB1P2-201ENST00000422712 1306 ntBASIC18.21■□□□□ 0.51
COL6A3P12111 TUBB1P1-201ENST00000503144 1300 ntBASIC18.21■□□□□ 0.51
COL6A3P12111 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL6A3P12111 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL6A3P12111 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC18.21■□□□□ 0.51
COL6A3P12111 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC18.21■□□□□ 0.51
COL6A3P12111 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
COL6A3P12111 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL6A3P12111 AC012676.1-201ENST00000574705 1949 ntBASIC18.21■□□□□ 0.51
COL6A3P12111 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC18.21■□□□□ 0.5
COL6A3P12111 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC18.21■□□□□ 0.5
COL6A3P12111 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
COL6A3P12111 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.5
COL6A3P12111 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.5
COL6A3P12111 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC18.2■□□□□ 0.5
COL6A3P12111 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL6A3P12111 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC18.2■□□□□ 0.5
COL6A3P12111 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL6A3P12111 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
COL6A3P12111 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC18.2■□□□□ 0.5
COL6A3P12111 BHMT-206ENST00000524080 1207 ntTSL 2 BASIC18.2■□□□□ 0.5
COL6A3P12111 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC18.2■□□□□ 0.5
COL6A3P12111 LINC00565-201ENST00000562710 2331 ntBASIC18.2■□□□□ 0.5
COL6A3P12111 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL6A3P12111 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL6A3P12111 AL157384.1-201ENST00000445995 2473 ntBASIC18.2■□□□□ 0.5
COL6A3P12111 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
COL6A3P12111 AKAP8P1-201ENST00000434743 1349 ntBASIC18.2■□□□□ 0.5
COL6A3P12111 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL6A3P12111 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
COL6A3P12111 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL6A3P12111 AC125437.2-201ENST00000625180 2167 ntBASIC18.2■□□□□ 0.5
COL6A3P12111 HARS-203ENST00000431330 1774 ntTSL 2 BASIC18.2■□□□□ 0.5
COL6A3P12111 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
COL6A3P12111 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL6A3P12111 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL6A3P12111 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL6A3P12111 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC18.2■□□□□ 0.5
COL6A3P12111 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL6A3P12111 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
COL6A3P12111 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC18.2■□□□□ 0.5
COL6A3P12111 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC18.2■□□□□ 0.5
COL6A3P12111 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
COL6A3P12111 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC18.2■□□□□ 0.5
COL6A3P12111 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC18.2■□□□□ 0.5
COL6A3P12111 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
COL6A3P12111 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
COL6A3P12111 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL6A3P12111 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
COL6A3P12111 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
COL6A3P12111 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC18.19■□□□□ 0.5
COL6A3P12111 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
COL6A3P12111 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL6A3P12111 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC18.19■□□□□ 0.5
COL6A3P12111 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL6A3P12111 AC253536.4-201ENST00000440539 267 ntBASIC18.19■□□□□ 0.5
COL6A3P12111 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC18.19■□□□□ 0.5
COL6A3P12111 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL6A3P12111 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC18.19■□□□□ 0.5
COL6A3P12111 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC18.19■□□□□ 0.5
COL6A3P12111 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC18.19■□□□□ 0.5
COL6A3P12111 MIR4722-201ENST00000578292 60 ntBASIC18.19■□□□□ 0.5
COL6A3P12111 PSENEN-203ENST00000591949 833 ntTSL 2 BASIC18.19■□□□□ 0.5
COL6A3P12111 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
COL6A3P12111 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL6A3P12111 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC18.19■□□□□ 0.5
COL6A3P12111 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL6A3P12111 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL6A3P12111 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
COL6A3P12111 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL6A3P12111 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
COL6A3P12111 TECR-220ENST00000600083 1204 ntTSL 2 BASIC18.19■□□□□ 0.5
COL6A3P12111 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
COL6A3P12111 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC18.18■□□□□ 0.5
COL6A3P12111 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
COL6A3P12111 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC18.18■□□□□ 0.5
COL6A3P12111 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC18.18■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 48.3 ms