Protein–RNA interactions for Protein: P12110

COL6A2, Collagen alpha-2(VI) chain, humanhuman

Predictions only

Length 1,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2P12110 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
COL6A2P12110 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
COL6A2P12110 AC096633.1-201ENST00000422446 749 ntBASIC17.47■□□□□ 0.39
COL6A2P12110 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC17.47■□□□□ 0.39
COL6A2P12110 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
COL6A2P12110 NAA38-203ENST00000575071 553 ntTSL 2 BASIC17.47■□□□□ 0.39
COL6A2P12110 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
COL6A2P12110 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC17.47■□□□□ 0.39
COL6A2P12110 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
COL6A2P12110 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC17.47■□□□□ 0.39
COL6A2P12110 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL6A2P12110 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL6A2P12110 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL6A2P12110 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
COL6A2P12110 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
COL6A2P12110 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
COL6A2P12110 NKILA-202ENST00000614771 2598 ntBASIC17.47■□□□□ 0.39
COL6A2P12110 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL6A2P12110 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
COL6A2P12110 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
COL6A2P12110 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
COL6A2P12110 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC17.47■□□□□ 0.39
COL6A2P12110 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC17.47■□□□□ 0.39
COL6A2P12110 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL6A2P12110 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
COL6A2P12110 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL6A2P12110 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
COL6A2P12110 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL6A2P12110 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL6A2P12110 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL6A2P12110 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL6A2P12110 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC17.46■□□□□ 0.39
COL6A2P12110 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC17.46■□□□□ 0.39
COL6A2P12110 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC17.46■□□□□ 0.39
COL6A2P12110 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
COL6A2P12110 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL6A2P12110 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL6A2P12110 IGHGP-201ENST00000390555 1178 ntBASIC17.46■□□□□ 0.39
COL6A2P12110 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC17.46■□□□□ 0.39
COL6A2P12110 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
COL6A2P12110 LIN28AP1-201ENST00000429574 405 ntBASIC17.46■□□□□ 0.39
COL6A2P12110 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC17.46■□□□□ 0.39
COL6A2P12110 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL6A2P12110 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL6A2P12110 AL441883.1-201ENST00000566170 1045 ntBASIC17.46■□□□□ 0.39
COL6A2P12110 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL6A2P12110 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
COL6A2P12110 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC17.46■□□□□ 0.39
COL6A2P12110 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC17.46■□□□□ 0.39
COL6A2P12110 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL6A2P12110 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC17.46■□□□□ 0.39
COL6A2P12110 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL6A2P12110 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL6A2P12110 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
COL6A2P12110 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
COL6A2P12110 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL6A2P12110 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL6A2P12110 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL6A2P12110 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.38
COL6A2P12110 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
COL6A2P12110 AC116353.5-201ENST00000638148 1699 ntBASIC17.45■□□□□ 0.38
COL6A2P12110 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC17.45■□□□□ 0.38
COL6A2P12110 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL6A2P12110 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL6A2P12110 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
COL6A2P12110 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC17.45■□□□□ 0.38
COL6A2P12110 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC17.45■□□□□ 0.38
COL6A2P12110 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL6A2P12110 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
COL6A2P12110 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL6A2P12110 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL6A2P12110 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC17.45■□□□□ 0.38
COL6A2P12110 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL6A2P12110 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC17.45■□□□□ 0.38
COL6A2P12110 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL6A2P12110 MTCL1P1-201ENST00000446207 792 ntBASIC17.45■□□□□ 0.38
COL6A2P12110 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL6A2P12110 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
COL6A2P12110 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL6A2P12110 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC17.45■□□□□ 0.38
COL6A2P12110 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC17.45■□□□□ 0.38
COL6A2P12110 AL139327.4-201ENST00000612362 153 ntBASIC17.45■□□□□ 0.38
COL6A2P12110 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
COL6A2P12110 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC17.45■□□□□ 0.38
COL6A2P12110 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL6A2P12110 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
COL6A2P12110 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC17.45■□□□□ 0.38
COL6A2P12110 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
COL6A2P12110 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL6A2P12110 LTF-203ENST00000426532 2494 ntTSL 2 BASIC17.45■□□□□ 0.38
COL6A2P12110 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
COL6A2P12110 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL6A2P12110 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL6A2P12110 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL6A2P12110 AL356309.3-201ENST00000624132 1934 ntBASIC17.45■□□□□ 0.38
COL6A2P12110 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL6A2P12110 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL6A2P12110 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC17.44■□□□□ 0.38
COL6A2P12110 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC17.44■□□□□ 0.38
COL6A2P12110 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms