Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC10.91□□□□□ -0.66
APOBP04114 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC10.91□□□□□ -0.66
APOBP04114 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC10.91□□□□□ -0.66
APOBP04114 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
APOBP04114 HARS-203ENST00000431330 1774 ntTSL 2 BASIC10.9□□□□□ -0.66
APOBP04114 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
APOBP04114 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC10.9□□□□□ -0.66
APOBP04114 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
APOBP04114 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC10.9□□□□□ -0.66
APOBP04114 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
APOBP04114 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC10.9□□□□□ -0.66
APOBP04114 AC009477.1-201ENST00000452936 217 ntBASIC10.9□□□□□ -0.66
APOBP04114 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
APOBP04114 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC10.9□□□□□ -0.66
APOBP04114 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC10.9□□□□□ -0.66
APOBP04114 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
APOBP04114 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
APOBP04114 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
APOBP04114 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
APOBP04114 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC10.9□□□□□ -0.66
APOBP04114 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC10.9□□□□□ -0.66
APOBP04114 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
APOBP04114 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC10.9□□□□□ -0.66
APOBP04114 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC10.9□□□□□ -0.66
APOBP04114 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC10.9□□□□□ -0.66
APOBP04114 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC10.9□□□□□ -0.66
APOBP04114 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC10.9□□□□□ -0.66
APOBP04114 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
APOBP04114 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC10.9□□□□□ -0.66
APOBP04114 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC10.9□□□□□ -0.66
APOBP04114 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.67
APOBP04114 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC10.9□□□□□ -0.67
APOBP04114 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.67
APOBP04114 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC10.9□□□□□ -0.67
APOBP04114 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.67
APOBP04114 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC10.9□□□□□ -0.67
APOBP04114 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.67
APOBP04114 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.67
APOBP04114 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC10.9□□□□□ -0.67
APOBP04114 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC10.89□□□□□ -0.67
APOBP04114 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC10.89□□□□□ -0.67
APOBP04114 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
APOBP04114 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC10.89□□□□□ -0.67
APOBP04114 RN7SL692P-201ENST00000464677 288 ntBASIC10.89□□□□□ -0.67
APOBP04114 DCTD-213ENST00000510370 794 ntAPPRIS P1 TSL 5 BASIC10.89□□□□□ -0.67
APOBP04114 DUTP2-201ENST00000519164 463 ntBASIC10.89□□□□□ -0.67
APOBP04114 AC107918.2-201ENST00000530817 355 ntBASIC10.89□□□□□ -0.67
APOBP04114 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC10.89□□□□□ -0.67
APOBP04114 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC10.89□□□□□ -0.67
APOBP04114 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC10.89□□□□□ -0.67
APOBP04114 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC10.89□□□□□ -0.67
APOBP04114 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
APOBP04114 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
APOBP04114 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
APOBP04114 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC10.89□□□□□ -0.67
APOBP04114 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC10.89□□□□□ -0.67
APOBP04114 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
APOBP04114 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
APOBP04114 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
APOBP04114 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
APOBP04114 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
APOBP04114 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC10.89□□□□□ -0.67
APOBP04114 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
APOBP04114 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
APOBP04114 AC073130.3-201ENST00000624389 2278 ntBASIC10.89□□□□□ -0.67
APOBP04114 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
APOBP04114 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
APOBP04114 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
APOBP04114 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
APOBP04114 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC10.89□□□□□ -0.67
APOBP04114 SPDYE7P-202ENST00000420373 878 ntBASIC10.89□□□□□ -0.67
APOBP04114 CXCL1P1-201ENST00000502804 216 ntBASIC10.89□□□□□ -0.67
APOBP04114 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC10.89□□□□□ -0.67
APOBP04114 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC10.89□□□□□ -0.67
APOBP04114 AC109635.5-201ENST00000533593 962 ntBASIC10.89□□□□□ -0.67
APOBP04114 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC10.89□□□□□ -0.67
APOBP04114 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
APOBP04114 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
APOBP04114 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC10.89□□□□□ -0.67
APOBP04114 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC10.89□□□□□ -0.67
APOBP04114 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
APOBP04114 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
APOBP04114 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
APOBP04114 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC10.89□□□□□ -0.67
APOBP04114 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC10.89□□□□□ -0.67
APOBP04114 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC10.89□□□□□ -0.67
APOBP04114 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC10.89□□□□□ -0.67
APOBP04114 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC10.89□□□□□ -0.67
APOBP04114 BSG-214ENST00000614867 960 ntTSL 3 BASIC10.89□□□□□ -0.67
APOBP04114 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC10.88□□□□□ -0.67
APOBP04114 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC10.88□□□□□ -0.67
APOBP04114 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC10.88□□□□□ -0.67
APOBP04114 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC10.88□□□□□ -0.67
APOBP04114 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC10.88□□□□□ -0.67
APOBP04114 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC10.88□□□□□ -0.67
APOBP04114 PIN1P1-201ENST00000412108 996 ntBASIC10.88□□□□□ -0.67
APOBP04114 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC10.88□□□□□ -0.67
APOBP04114 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC10.88□□□□□ -0.67
APOBP04114 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC10.88□□□□□ -0.67
APOBP04114 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC10.88□□□□□ -0.67
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms