Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SEMA3DO95025 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
SEMA3DO95025 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SEMA3DO95025 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SEMA3DO95025 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
SEMA3DO95025 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC16.95■□□□□ 0.3
SEMA3DO95025 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SEMA3DO95025 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SEMA3DO95025 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SEMA3DO95025 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC16.95■□□□□ 0.3
SEMA3DO95025 CNP-204ENST00000472031 1019 ntTSL 2 BASIC16.95■□□□□ 0.3
SEMA3DO95025 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC16.95■□□□□ 0.3
SEMA3DO95025 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC16.95■□□□□ 0.3
SEMA3DO95025 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC16.95■□□□□ 0.3
SEMA3DO95025 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC16.95■□□□□ 0.3
SEMA3DO95025 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC16.95■□□□□ 0.3
SEMA3DO95025 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
SEMA3DO95025 NTF6B-201ENST00000591913 560 ntBASIC16.95■□□□□ 0.3
SEMA3DO95025 NDUFV2-AS1-203ENST00000608008 779 ntBASIC16.95■□□□□ 0.3
SEMA3DO95025 AL592071.1-201ENST00000611956 408 ntBASIC16.95■□□□□ 0.3
SEMA3DO95025 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC16.95■□□□□ 0.3
SEMA3DO95025 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
SEMA3DO95025 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
SEMA3DO95025 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
SEMA3DO95025 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SEMA3DO95025 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
SEMA3DO95025 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
SEMA3DO95025 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SEMA3DO95025 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC16.95■□□□□ 0.3
SEMA3DO95025 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
SEMA3DO95025 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SEMA3DO95025 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
SEMA3DO95025 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SEMA3DO95025 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SEMA3DO95025 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC16.95■□□□□ 0.3
SEMA3DO95025 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SEMA3DO95025 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SEMA3DO95025 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC16.95■□□□□ 0.3
SEMA3DO95025 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC16.94■□□□□ 0.3
SEMA3DO95025 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC16.94■□□□□ 0.3
SEMA3DO95025 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
SEMA3DO95025 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC16.94■□□□□ 0.3
SEMA3DO95025 AL138688.1-201ENST00000624851 1594 ntBASIC16.94■□□□□ 0.3
SEMA3DO95025 AC124067.4-201ENST00000519691 2379 ntBASIC16.94■□□□□ 0.3
SEMA3DO95025 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
SEMA3DO95025 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
SEMA3DO95025 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC16.94■□□□□ 0.3
SEMA3DO95025 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
SEMA3DO95025 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SEMA3DO95025 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
SEMA3DO95025 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC16.94■□□□□ 0.3
SEMA3DO95025 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
SEMA3DO95025 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
SEMA3DO95025 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC16.94■□□□□ 0.3
SEMA3DO95025 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SEMA3DO95025 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
SEMA3DO95025 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
SEMA3DO95025 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC16.94■□□□□ 0.3
SEMA3DO95025 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SEMA3DO95025 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
SEMA3DO95025 REXO1L11P-201ENST00000620964 1927 ntBASIC16.94■□□□□ 0.3
SEMA3DO95025 AC005332.1-201ENST00000577698 1310 ntBASIC16.94■□□□□ 0.3
SEMA3DO95025 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
SEMA3DO95025 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SEMA3DO95025 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SEMA3DO95025 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC16.93■□□□□ 0.3
SEMA3DO95025 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
SEMA3DO95025 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC16.93■□□□□ 0.3
SEMA3DO95025 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC16.93■□□□□ 0.3
SEMA3DO95025 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SEMA3DO95025 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SEMA3DO95025 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC16.93■□□□□ 0.3
SEMA3DO95025 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SEMA3DO95025 AL139384.1-201ENST00000612143 3047 ntBASIC16.93■□□□□ 0.3
SEMA3DO95025 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SEMA3DO95025 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
SEMA3DO95025 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
SEMA3DO95025 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
SEMA3DO95025 AC005104.2-201ENST00000427818 678 ntBASIC16.93■□□□□ 0.3
SEMA3DO95025 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC16.93■□□□□ 0.3
SEMA3DO95025 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
SEMA3DO95025 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SEMA3DO95025 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC16.93■□□□□ 0.3
SEMA3DO95025 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
SEMA3DO95025 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SEMA3DO95025 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SEMA3DO95025 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SEMA3DO95025 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
SEMA3DO95025 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
SEMA3DO95025 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SEMA3DO95025 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC16.93■□□□□ 0.3
SEMA3DO95025 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC16.93■□□□□ 0.3
SEMA3DO95025 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SEMA3DO95025 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC16.93■□□□□ 0.3
SEMA3DO95025 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SEMA3DO95025 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
SEMA3DO95025 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC16.92■□□□□ 0.3
SEMA3DO95025 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SEMA3DO95025 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
SEMA3DO95025 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms