Protein–RNA interactions for Protein: O94913

PCF11, Pre-mRNA cleavage complex 2 protein Pcf11, humanhuman

Known RBP Predictions only

Length 1,555 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11O94913 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
PCF11O94913 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
PCF11O94913 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
PCF11O94913 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC27.32■■□□□ 1.96
PCF11O94913 PNKD-204ENST00000436005 978 ntTSL 5 BASIC27.32■■□□□ 1.96
PCF11O94913 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC27.32■■□□□ 1.96
PCF11O94913 KRT19P2-202ENST00000557173 1012 ntBASIC27.32■■□□□ 1.96
PCF11O94913 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC27.32■■□□□ 1.96
PCF11O94913 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC27.32■■□□□ 1.96
PCF11O94913 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC27.32■■□□□ 1.96
PCF11O94913 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC27.32■■□□□ 1.96
PCF11O94913 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC27.32■■□□□ 1.96
PCF11O94913 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC27.32■■□□□ 1.96
PCF11O94913 AL354751.1-201ENST00000412768 1863 ntBASIC27.32■■□□□ 1.96
PCF11O94913 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC27.32■■□□□ 1.96
PCF11O94913 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC27.32■■□□□ 1.96
PCF11O94913 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC27.32■■□□□ 1.96
PCF11O94913 AL135999.2-201ENST00000622438 1686 ntBASIC27.32■■□□□ 1.96
PCF11O94913 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC27.31■■□□□ 1.96
PCF11O94913 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC27.31■■□□□ 1.96
PCF11O94913 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC27.31■■□□□ 1.96
PCF11O94913 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC27.31■■□□□ 1.96
PCF11O94913 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC27.31■■□□□ 1.96
PCF11O94913 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC27.31■■□□□ 1.96
PCF11O94913 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC27.31■■□□□ 1.96
PCF11O94913 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC27.31■■□□□ 1.96
PCF11O94913 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC27.31■■□□□ 1.96
PCF11O94913 CD63-210ENST00000550776 870 ntTSL 5 BASIC27.31■■□□□ 1.96
PCF11O94913 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC27.31■■□□□ 1.96
PCF11O94913 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC27.31■■□□□ 1.96
PCF11O94913 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
PCF11O94913 CYP51A1P2-201ENST00000419457 1499 ntBASIC27.31■■□□□ 1.96
PCF11O94913 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC27.31■■□□□ 1.96
PCF11O94913 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
PCF11O94913 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC27.31■■□□□ 1.96
PCF11O94913 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
PCF11O94913 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC27.31■■□□□ 1.96
PCF11O94913 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC27.31■■□□□ 1.96
PCF11O94913 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
PCF11O94913 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC27.31■■□□□ 1.96
PCF11O94913 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
PCF11O94913 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC27.31■■□□□ 1.96
PCF11O94913 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
PCF11O94913 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC27.31■■□□□ 1.96
PCF11O94913 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC27.31■■□□□ 1.96
PCF11O94913 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC27.31■■□□□ 1.96
PCF11O94913 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC27.31■■□□□ 1.96
PCF11O94913 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC27.31■■□□□ 1.96
PCF11O94913 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC27.31■■□□□ 1.96
PCF11O94913 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
PCF11O94913 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
PCF11O94913 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC27.3■■□□□ 1.96
PCF11O94913 AC087289.5-201ENST00000586076 3175 ntBASIC27.3■■□□□ 1.96
PCF11O94913 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC27.3■■□□□ 1.96
PCF11O94913 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC27.3■■□□□ 1.96
PCF11O94913 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC27.3■■□□□ 1.96
PCF11O94913 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC27.3■■□□□ 1.96
PCF11O94913 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
PCF11O94913 AC006116.8-202ENST00000587620 1550 ntBASIC27.3■■□□□ 1.96
PCF11O94913 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC27.3■■□□□ 1.96
PCF11O94913 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
PCF11O94913 AL645939.2-201ENST00000427340 991 ntBASIC27.3■■□□□ 1.96
PCF11O94913 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC27.3■■□□□ 1.96
PCF11O94913 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC27.3■■□□□ 1.96
PCF11O94913 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC27.3■■□□□ 1.96
PCF11O94913 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC27.3■■□□□ 1.96
PCF11O94913 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC27.3■■□□□ 1.96
PCF11O94913 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC27.3■■□□□ 1.96
PCF11O94913 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
PCF11O94913 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC27.29■■□□□ 1.96
PCF11O94913 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
PCF11O94913 METTL26-205ENST00000397666 726 ntTSL 2 BASIC27.29■■□□□ 1.96
PCF11O94913 RHOQP3-201ENST00000437982 621 ntBASIC27.29■■□□□ 1.96
PCF11O94913 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC27.29■■□□□ 1.96
PCF11O94913 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
PCF11O94913 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC27.29■■□□□ 1.96
PCF11O94913 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
PCF11O94913 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
PCF11O94913 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC27.29■■□□□ 1.96
PCF11O94913 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC27.29■■□□□ 1.96
PCF11O94913 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC27.29■■□□□ 1.96
PCF11O94913 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC27.29■■□□□ 1.96
PCF11O94913 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
PCF11O94913 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC27.28■■□□□ 1.96
PCF11O94913 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
PCF11O94913 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC27.28■■□□□ 1.96
PCF11O94913 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC27.28■■□□□ 1.96
PCF11O94913 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC27.28■■□□□ 1.96
PCF11O94913 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC27.28■■□□□ 1.96
PCF11O94913 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
PCF11O94913 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
PCF11O94913 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
PCF11O94913 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC27.28■■□□□ 1.96
PCF11O94913 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC27.28■■□□□ 1.96
PCF11O94913 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
PCF11O94913 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
PCF11O94913 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC27.28■■□□□ 1.96
PCF11O94913 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC27.28■■□□□ 1.96
PCF11O94913 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC27.27■■□□□ 1.96
PCF11O94913 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC27.27■■□□□ 1.96
Retrieved 100 of 98,524 protein–RNA pairs in 71.6 ms